BAC Information

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BAC

Clone NameMSMg01-276D09
Chromosome4 (Build37)
Map Location 64,849,518 - 64,849,806
singlet/doubletsinglet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D09.T7 (MSMg01no276_d09.b1)MSMg01-276D09.TJ (MSMg01no276_d09.g1)
ACCAG414457AG414458
length762768
length of high quality
(start - end)
239 (128 - 366)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no276_d09.b1 PHD_FILE: MSMg01no276_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005CHROMAT_FILE: MSMg01no276_d09.g1 PHD_FILE: MSMg01no276_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCATGGAACCGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTTAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTTTTTCTGGTACGAACGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAATAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATTGAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGTAC
AAAACACCCATG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTCTTCCCTATTGCAAAGATAC
TGTTCTTGAAACCAATCTATTATATATCTAATTCATGGTCAGTGCTATAA
ACCAGGGCTGTGGAAGGATGGGACTTAAAATGTTCCTGACCTTAAGCGGG
TATGAACACATCACATGAACAGGGATTGTTCTGTGCTCACTAATGTGATG
TAGACCATCACTGAATTGATAGAGATGGCATGTGGGGGAAGAGAACCAAC
TAAATAGCCACCAAAGATGGATGTACATGTGTGGTCAACTAGATCACTTG
GTTAAGGTCGAGAAATATTTTTTGTCTACCCCCCCCGCTAACGACACAGC
TAGAGGCATGTAAAGCCATAGTTAGGAAATGAGTATACACGCCAGGCTGT
ATATAGAATGCTACCTTAGCTGGATTTCTGTTGCTGTGGTAAAGATCATG
ACCAAAAGCAACTTGGGAAGGAAAGGGTTTCCTTGATCTATACTTCCATG
TCACAGTCCATCTTAGGGGAATGTCAGGGCAGGAACTCAAGGCTAGAACC
TGGAGGCAGGAATTTAAGCAGAGGCCATGGAGGTATGCTGCTTATTGCCT
TGCTCCTAATAGTTTGCTCAGTCTGTTTTCTTATATAGCACTGGACCAGC
TGTTTATTGGTGGTACTACCTACAGGAAGCTGGGTCCTTCTACATAAATC
ATCAATAAAATGCCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d09.g1 MSMg01no276_d09.g1 CHROMAT_FILE:
MSMg01no276_d09.g1 PHD_FILE: MSMg01no276_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:06 2005
         (291 letters)



>mm_chr4_64849318_64850008
          Length = 691

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcttccctattgcaaagatactgttcttgaaaccaatctattatatatctaattcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 489 tactcttccctattgcaaagatactgttcttgaaaccaatctattaaatatctaattcat 430

                                                                       
Query: 61  ggtcagtgctataaaccagggctgtggaaggatgggacttaaaatgttcctgaccttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggtcagtgctataaaccagggctgtggaaggatgggacttaaaatgttcctgaccttaag 370

                                                                       
Query: 121 cgggtatgaacacatcacatgaacagggattgttctgtgctcactaatgtgatgtagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cgggtatgaacacatcacatgaacagggattgttctgtgctcactaatgtgatgtagacc 310

                                                                       
Query: 181 atcactgaattgatagagatggcatgtgggggaagagaaccaactaaatagccaccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcactgaattgatagagatggcatgtgggggaagagaaccaactaaatagccaccaaag 250

                                                            
Query: 241 atggatgtacatgtgtggtcaactagatcacttggttaaggtcgagaaa 289
           ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 249 atggatgtacatgtggggtcaactagatcacttggttaaggtcgagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)