BAC Information

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BAC

Clone NameMSMg01-277E10
Chromosome4 (Build37)
Map Location 116,468,864 - 116,469,156
singlet/doubletsinglet
Overlap geneTesk2
Upstream geneAtpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik
Downstream geneToe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277E10.T7 (MSMg01no277_e10.b1)MSMg01-277E10.TJ (MSMg01no277_e10.g1)
ACCAG415223AG415224
length725729
length of high quality
(start - end)
294 (432 - 725)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no277_e10.b1 PHD_FILE: MSMg01no277_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:23 2005CHROMAT_FILE: MSMg01no277_e10.g1 PHD_FILE: MSMg01no277_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGCTCTCCGAAACATTTGTGGGGCCAACAAGGCCCCATGTGACC
CAACCCAGCCCTCCCTCCCCCCCTCTGTTGCCAGTCTGGCTGAGTTACCT
CCTGTTTATTGCACACCAGGTACACATTAACTGATTATTCTGATCTTGAT
GTACTCTGGCTATTCTTCCCTGTTATTATTCCATCACAATCAATCCTGGA
CCCTAGAGAAGTAAAGTGGGTGACTTTCAAGGACTGTCCTTGTGCTGGCT
CGTCTCTAAGTTCTGCTGTATCAACACTCCAGATCTCTGACTTTGTCTAT
GAAAATAAGGTCCCTATCCCCCCCCCCCAGCTAAAGCCCCAGGTCTAGGT
CAGCCTGTGAGACAGTGACAGAAACAAATACATTACTTCTTTCTCTCATC
CTCTTCATGATTCACCAACAACTCAGACTTCTGTTTCCAGGGCTGTTCTA
CTGTCCTATTTGCTGTTTGATTTGGTTTTTAGAAATTCTGACCAGGTGTA
GTGACACATACTTTTAATCTCAGTGCTCAGAAGCAAGAGGATCTCTGTGA
GTTGGAGGCTAGCTTGTCTATACAGTGAGTTCCAGGACATTTAGTAATAT
AAATAGTGAGACCCTGTCTCAGAAGAAAAAAAAAAGGGGGTAATAACTCC
AGGTGCCCTAACAGCCACTCCCTGC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGGCCAGACTAGTCAGCATAGTG
AGTTCCAGGACAGCCAGTGCTGCCATACAGAGAAATAGGAGGCTACAGTA
TTAGCTCAGTGGGTAAATATCTTGTTGAACAAGCATGAGGACTGGAGGTG
GATCCCTAAGACCCTCTTAAACGCAGGGTAGACCAACTTGTATTTCCAGT
ACTTAGAAAGTAGAGAAGGGATCCTACTCAGCAAGATCTGGGTTCAGTTG
AGAGAGCTGTATTCAATAAATGATCAAAGATTCCCAATATCAACCTTGTA
CCTTTGACTGATTATTAGTGCACCGCCCACACACACCATACAAATATACA
AGCACATATACAAAGTAGGCATGCCACAAACATAAAAATAAAATTAAAAA
AAAAAACTAAAGCATGGTGACACACCCTTTAATCCCAGCACCGAGAAGAT
AGGCATAGGTCAGCATGGTCTACATGGTGTGTTCCAAGTGAGTCAGGGCT
AAAATAAGGCCTTGTTCTCAGAAGGGGAAACATGGTACATGTGGAATGTG
AGTGATACAGAGAGGCTAGCAACAGCTCAGTATAAGCATTGGACCTAGAT
TCAATTCCCAGCACCCATATGGCATCTAGTTCAAGGGGATCTAGTAACCT
ATTCTGGCTTCCAAGTAACACTAGGTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_e10.b1 MSMg01no277_e10.b1 CHROMAT_FILE:
MSMg01no277_e10.b1 PHD_FILE: MSMg01no277_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:23 2005
         (294 letters)



>mm_chr4_116468847_116469540
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacttctttctctcatcctcttcatgattcaccaacaactcagacttctgtttccagg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 310 attacttctttctctcatcctcttcatggttcaccaacaactcagacttctgtttccagg 251

                                                                       
Query: 61  gctgttctactgtcctatttgctgtttgatttggtttttagaaattctgaccaggtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctgttctactgtcctatttgctgtttgatttggtttttagaaattctgaccaggtgtag 191

                                                                       
Query: 121 tgacacatacttttaatctcagtgctcagaagcaagaggatctctgtgagttggaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgacacatacttttaatctcagtgctcagaagcaagaggatctctgtgagttggaggcta 131

                                                                       
Query: 181 gcttgtctatacagtgagttccaggacatttagtaatataaatagtgagaccctgtctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gcttgtctatacagtgagttccaggacatttagtaatataaatagtgagaccctgtctca 71

                                                                 
Query: 241 gaagaaaaaaaaaagggggtaataactccaggtgccctaacagccactccctgc 294
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gaagaaaaaaaaaa-ggggtaataactccaggtgccctaacagccactccctgc 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)