BAC Information

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BAC

Clone NameMSMg01-277F04
Chromosome4 (Build37)
Map Location 69,880,685 - 69,881,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneCdk5rap2, Megf9, LOC100039565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277F04.T7 (MSMg01no277_f04.b1)MSMg01-277F04.TJ (MSMg01no277_f04.g1)
ACCAG415258AG415259
length728710
length of high quality
(start - end)
598 (126 - 723)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no277_f04.b1 PHD_FILE: MSMg01no277_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:26 2005CHROMAT_FILE: MSMg01no277_f04.g1 PHD_FILE: MSMg01no277_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATACTTAGACAATCGGATGAAACTAGAAAATATCATCCTG
AGTAAGGTAACCCAATCACACCACGAACACACATGGTATTCATTCACTGA
TAAGTGGATGTTAGCCCAGGATCTCGGAATATTCAAGATACAATTCACAG
ACCACAAGAAGCTCAAGAAGAAGGAAGACCAAAATATGGATACTTTGGTC
CTTCTTAGAAGGGGGATCAAAATACCCATAGGAGGAGTTACAGAGACAAA
GTGTGGAGCAGAGACTAAAGGAAAGGACATCCAGAGACTGCCCCACCAGG
GGATCCATTCCATTTTTCAGTTACTAAACCCAGACACCAAAACCGGATGC
CAAAAAGTGCTTGCTGGCAGGAGCCCGATATTGCTGTGGAGGCTTTGCCA
GTGCCTGACAAATACAGAGGTGGATGATCTCAGCCAACCGTTGCACTAAG
CACAAGGGTCCCCTATGGAGGAGCTAGAAAAAGGACTGAAGGAGCTGAAG
GGGTTTGCAGCCCCATAGGAAGAACAACAATATGAAACAACTAGTAACCC
CAGAGCTCCCAGGGACTAAACCAAAAAGTACACATGGAGTCACCCATGGC
TTTAGTTGTATATGTAGAACAGAATGGCCTTGTTGGACATCAATGGGGCA
GAGAGGCCTTTGGTTCTATTAAGGCTCA
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGACACAGCAGCCCCAAGAACT
GCTTGTAAATGGCCCATGAAAGGAGAAAGAGTGATCTTGTTAATAAGGTC
TCAGTATTGTGGAGGCCAAGAAGCCCGCCTTCGGGAACCTGGCCCTGCCA
GATTGCCTCTTCAATCTTGGCTGTATTTTAAGTCGAAGTAAAAAATTCAA
TTATCACAGTGACTCATCCTGTCTCTTGAGAAACCCAGGCTCAGCCTCAG
CAGCAGCAAGGCAGCTCCCCTCTCACCACAAACAGGTCGACCACTCTACC
TGTGCTGTCAGGTACCAGGTACGTGACTGTGGACAAACGTTGGGACCCAG
GATCTTGCTGAGGCCTCAGGGCTCTTGGTTGGAGCAAGCCTGTTTTCTCA
TCAGCAGGTGTAATGGGCACTATGCAGCCAGACTGGCCAGACCCTGGGGT
ATCTCTTCAACCACAGTCCCTTCTTCAACAGAGTAGCATAAGCTAGTGGC
TCTGATACCTCTGGTTCCCTTACTGTCTAGACTCTCTGTGTCAATGGAGC
CACTTGATCCCCAGTGACATTTCCTCCAGGTGACCATCTACACTCATCTG
GACCACCTTGTACGGTAGTCTATCCTCTGAGCTCCCCATATCCACCCAGA
TCTGGTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_f04.g1 MSMg01no277_f04.g1 CHROMAT_FILE:
MSMg01no277_f04.g1 PHD_FILE: MSMg01no277_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:26 2005
         (586 letters)



>mm_chr4_69880485_69881470
          Length = 986

 Score =  874 bits (452), Expect = 0.0
 Identities = 479/488 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgacacagcagccccaagaactgcttgtaaatggcccatgaaaggagaaagagtgatc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 688 cttgacacagcagccccaagaactgcttgtaaatgacccatgaaaggagaaagagtgatc 629

                                                                       
Query: 61  ttgttaataaggtctcagtattgtggaggccaagaagcccgccttcgggaacctggccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgttaataaggtctcagtattgtggaggccaagaagcccgccttcgggaacctggccct 569

                                                                       
Query: 121 gccagattgcctcttcaatcttggctgtattttaagtcgaagtaaaaaattcaattatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gccagattgcctcttcaatcttggctgtattttaagtcgaagtaaaaaattcaattatca 509

                                                                       
Query: 181 cagtgactcatcctgtctcttgagaaacccaggctcagcctcagcagcagcaaggcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cagtgactcatcctgtctcttgagaaacccaggctcagcctcagcagcagcaaggcagct 449

                                                                       
Query: 241 cccctctcaccacaaacaggtcgaccactctacctgtgctgtcaggtaccaggtacgtga 300
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 448 cccctctcaccacaaacaggtcgtccactctacctgtgctgtcaggtgccaggtaggtga 389

                                                                       
Query: 301 ctgtggacaaacgttgggacccaggatcttgctgaggcctcagggctcttggttggagca 360
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 388 ctgtggacaaaccttgggacccaggatcttgctgagacctcagggctcttggttggagca 329

                                                                       
Query: 361 agcctgttttctcatcagcaggtgtaatgggcactatgcagccagactggccagaccctg 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agcctgttttctcatcagcagatgtaatgggcactatgcagccagactggccagaccctg 269

                                                                       
Query: 421 gggtatctcttcaaccacagtcccttcttcaacagagtagcataagctagtggctctgat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 268 gggtatctcttcaaccacagtcccttcttcaacagagtagcataagctagtgaccctgat 209

                   
Query: 481 acctctgg 488
           ||||||||
Sbjct: 208 acctctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)