BAC Information

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BAC

Clone NameMSMg01-277H05
Chromosome4 (Build37)
Map Location 77,348,539 - 77,348,773
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277H05.T7 (MSMg01no277_h05.b1)MSMg01-277H05.TJ (MSMg01no277_h05.g1)
ACCAG415348AG415349
length730737
length of high quality
(start - end)
320 (43 - 362)241 (129 - 369)
definitionCHROMAT_FILE: MSMg01no277_h05.b1 PHD_FILE: MSMg01no277_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:35 2005CHROMAT_FILE: MSMg01no277_h05.g1 PHD_FILE: MSMg01no277_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGGTGATGCAGAGGCC
ATGGAGGGATGTTCTTTACCCGTTTGCTTCCCCTGGATTGCTCAGCCTGC
TCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGCACCACCCACAAGG
GGACTTCCCCCCTTGATCACTAATTGAGAAAATGCCTTACGGCTGGATCT
CATGGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGC
CTGTGTCAAGTTGACACAAAACTAGCCAGTACACAGTTATAGTACAGACT
AAGGGAATGATCTTTTTTAACTGCACCCCCCTTGAGACCAATGCCAGAGG
AATAAGCCAATCCTTGACATTAATGATACTGAAATGCTTGCAAACAGAAG
CTTAGCATTTCTTTCTCCAGAGAGGCTTCATCCAGCAGCAAATGGAAATA
GATGCACAGACTCACAGCCAAGCATCATGCAGTGCTCAGCAAGTCCTGTG
GAAGAGTAAGGCCATGAATTGAGTCAGCCAGAGGGGTCAAGAACACCACA
AGAAGACCTACCGAGTCAACTAAACTGTTCCATGTGGGCTTAACTGGACT
GAGCCAACAGCCAAGAAGCTTTGCTCCCTGCACATTTGGAGAGGATGTTC
AGCTTGGTTTTCCAATAAAAAAAGCAATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCACAAAATTACAAATGTGTGA
TAAATGGTGCTTTTGAATATATATGCCCCAAGTCTACTGAGAATACAGAG
TGTGTCTTTCAGGAAAGGAATTCAAAGCAAGTCCTACTGAGCTGGTATTT
GGAACCACCAAACTTACAAGCTCTCTAAGGGGTGAAAGTATGTTCACAAA
GCCTGGGGTGTGCAAAGTCAATGAGAAGTGGCCAATATGAGGCAGCTATT
CTAAAGCAAGTATGGTTGAAACAAGAGCATAATGATATAGCAAACTAAGA
CTTCATGTGCAGGTTCTGTCTCTTATATACTCCGCCCCGCCTTCTCCTAT
GTGCTGAATTTAGAACTACATTTGAACTAGTAAGTGAGATGATTTTGACA
TTGACTTCGAAGTGATGGTTCTACATACATGAGTTAACTCGACTTCTAAT
TACTCATGTTCATACAATAAAGCTTTTAATGGCATGCATGAAAGAGGGCA
GATGTATCATTACAAACTGCATTATAATGTGAGTGAGATTATGTTCAGAA
CTGTACTCATTTACATGGTGTGACTATATATACTTGTAAAAAGATATCCC
ATACTTTGTAATATTGGCTCCCGACATGAACTTTGTAGCACTGTTAATGA
CCAATTATGCCTGTTGTTGCAATATCTGCGTGTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_h05.g1 MSMg01no277_h05.g1 CHROMAT_FILE:
MSMg01no277_h05.g1 PHD_FILE: MSMg01no277_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:35 2005
         (241 letters)



>mm_chr4_77348334_77348974
          Length = 641

 Score =  410 bits (212), Expect = e-119
 Identities = 230/236 (97%), Gaps = 2/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ctactgagaatacagagtgtgtctttcaggaaaggaattcaaagcaagtcctactgagct 65
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 ctactgaggatacagagtgtgtctttcaggaaaggaattcaaagcaagtcctactgaact 381

                                                                       
Query: 66  ggtatttggaaccaccaaacttacaagctctctaaggggtga-aagtatgttcacaaagc 124
           |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct: 380 ggtatttggaaccaccaaacttacaagctctctatggggtgagaa-tatgttcacaaagc 322

                                                                       
Query: 125 ctggggtgtgcaaagtcaatgagaagtggccaatatgaggcagctattctaaagcaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggggtgtgcaaagtcaatgagaagtggccaatatgaggcagctattctaaagcaagta 262

                                                                   
Query: 185 tggttgaaacaagagcataatgatatagcaaactaagacttcatgtgcaggttctg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttgaaacaagagcagaatgatatagcaaactaagacttcatgtgcaggttctg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)