BAC Information

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BAC

Clone NameMSMg01-277H19
Chromosome4 (Build37)
Map Location 114,510,121 - 114,510,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik, LOC666048
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277H19.T7 (MSMg01no277_h19.b1)MSMg01-277H19.TJ (MSMg01no277_h19.g1)
ACCAG415373AG415374
length729732
length of high quality
(start - end)
---232 (133 - 364)
definitionCHROMAT_FILE: MSMg01no277_h19.b1 PHD_FILE: MSMg01no277_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:38 2005CHROMAT_FILE: MSMg01no277_h19.g1 PHD_FILE: MSMg01no277_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCTGTGGATTTGCTGCGGCTCCTTGACGAGCCTCTCAGCTGCTAACT
GATTGACCCTGGTATTTACCCTCCTGGAACCTCCTTCTCTCACTCTACAG
TAGAACCCTGGGATGCACTTTCCCTGACCCTCGTTGGCTCTTTCGTTTTA
CCTGCTCAGAGTCATGTGGAGTTGTCTAGGGGTAATGACCACGCTGAAGT
GTGTGCTCGACATGTACGAGAAATCGATACTGATTCCAACCAGATGACCC
AGCACGAATGGGCGTGGGACCTGTCGGCACCTCTGCATTTTCACCTGCTC
AGGTGAGATTGATCCGTTATTCGCCCCCCCCGCCCCCGGGATTACGTATG
GTCTGGAGACGCTGGCCTTCCGGAAGATATAAAATAAAAGACTGGGGGGC
ACCGGTGTAGCCAGGTCTATGTGCACAGTATCTCTTCCGCCTCCGCTCAC
CATGATAATGACTCCATATGAATATTGCCACACGTGGACTTGACGCGTCT
AGAAAATTAGCTGTGATAAACTCCCGTTCTATAGCTCATGTGAAGACATG
TAGTCTGACCGTCAAATTCACCGTGACCCTCATTCTTTCTTCGTAACCTG
TATGCTCTGAGATTTAATAAAGGCCCTCCACTGTACTATCTACGACAACA
GATGCAGACTTGTATCCCTGGCCCTTGAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATCTCTTCCCTGTATGCATGAT
CTGATTATGAGAGTCTAGAATTTCAGCCTTTTAGAAGTGTAAGATTCAAC
AACACCTCTAGGTTTTGATAGCCTCAGATTCTATCTGTTTGAAGATTCTT
GAATCCTCAGGTGCCAAAATTCTAGAATTCTCATATTCCAGCTTGAAAGG
CAAATGCCAAGTACCTGCAGATATCAGTGAGGGTCAGGGGACCTAAAGGG
AGTGATTCTTAGCCTTGCCAGTCTCTCTGCTTCAAGAATCAGAGGGTCCT
GTTGCCCCTGCAGGGATTCTACTTATATCTCCGACACCTGACACTTGGGA
ACTGGGAGCCCTGGGAGCAGGAGTGAGACCTCAACAATAAACCTGCTGCA
TCTTCTGATAAGGGCCAGAAAGCATTGAGACTGGCCCTTGGAGTTCCCTG
AGAACAATAACATCCCCATGCCTGCAGACCTCAAGCAAACCTATGTTGCC
CTCAGCACTGCAGAGGCCAAAGCAGGAAAAGAGAGATGGTGAGACCACCA
CCCTGGGGCAGATGTTATGTTTCTGGTGGAGACTGGGCACCATACCTGGT
GGTCTTGAGGCAAATGTCTGCTCAAGGACCACAGGGAGGCCATCCCACAG
CCAAGAAGCAGAGCTGGCTAGCCACATTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_h19.g1 MSMg01no277_h19.g1 CHROMAT_FILE:
MSMg01no277_h19.g1 PHD_FILE: MSMg01no277_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:38 2005
         (232 letters)



>mm_chr4_114509921_114510553
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%), Gaps = 1/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagtgtaagattcaacaacacctctaggttttgatagcctcagattctatctgtttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaagtgtaagattcaacaacacctctaggttttgatagcctcagattctatctgtttga 374

                                                                       
Query: 61  agattcttgaatcctcaggtgccaaaattctagaattctcatattccagcttgaaaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agattcttgaatcctcaggtgccaaaattctagaattctcatattccagcttgaaaggca 314

                                                                       
Query: 121 aatgccaagtacctgcagatatcagtgagggtcaggggacctaaa-gggagtgattctta 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 313 aatgccaagtacctgcagatatcagtgagggtcaggggacctaaaggggagtgattctta 254

                                                                
Query: 180 gccttgccagtctctctgcttcaagaatcagagggtcctgttgcccctgcagg 232
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 253 gccttgccagtctctctgcttcaagaatccgagggtcctgttgcccctgcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 633
Length adjustment: 9
Effective length of query: 223
Effective length of database: 624
Effective search space:   139152
Effective search space used:   139152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)