BAC Information

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BAC

Clone NameMSMg01-277I08
Chromosome4 (Build37)
Map Location 93,321,656 - 93,321,893
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I08.T7 (MSMg01no277_i08.b1)MSMg01-277I08.TJ (MSMg01no277_i08.g1)
ACCAG415398AG415399
length734734
length of high quality
(start - end)
319 (47 - 365)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no277_i08.b1 PHD_FILE: MSMg01no277_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:40 2005CHROMAT_FILE: MSMg01no277_i08.g1 PHD_FILE: MSMg01no277_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCATTTATTTTATATGTATGGATTTTTTGCCTGCAAGTATGG
ATGTACACCACATATATGTTTGGCCTTTGTGCAAGCTACAAGAGTATTGT
GTGTAGTGGGACTAGAGTTAGAAATCGTTGTGATCTGGCATGTAGGTACT
AACAATTGAACCCAGTCTGTCTGGGAGAGCAGCCAGAGCTCTTAACTGCT
GAGCCGTCTCTCTACCACTGTATTCTTAATACCATTCACACATGTTACTC
TAATAAAACTTAAAATTTCAAAAAAGAAGCTGTACTATTTATCTTTTTCT
CAATTTTACATGATTTATTTTCATACCCCCACATCGGGTCCTCAACTGAG
AAAATGCTCCCATCAGACTAGCCTGTGTGCAAGTCTGTTGAGAGCATTTT
CTTGCTTAATGATTGATGTGGAATGAATTCTTTTATTGTTTATTTTCCGA
TATCTTTCTTACAAATCATATTATGCTTTGCTGTTTAAGCTCAATGTTTG
GAAATTTCACTTTCCTGAGATCCCCAAGACTCCATTTCTCTTCCTTGCCC
AGATCATTTAATATGGTTATTTAGGTTCTTATAAAATGTTTTGGGAATCT
GCTATTGATTTCAGTGGGTTTGCTTGATACAAGGAAACTGACCTATTAGG
AAAAACATTGAGAGAGATCTTATTTTATGTACTA
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACATTGTCAGCAATGGAGATAAAAT
CATTTATATCCAAGAAATTTTAACCAGCCTCAGCCTGAATAGTTGACAGC
ACCAAAGGAAATTGAAGGAGGCTCTCCTCATTTGGTGCTGCACAATCTTT
GAATTCAGTAGGGGGGCCATTTACAATGACATAGTACTGGTTTGAAGAAT
GATCACTCCCACCATAGCATGCTTTTATCACTTAGGGAGAGCACTGCACT
TTCTTTTTACACAAGGATATTATGCTCCTCCCCCTCCCACTGCCTAGAAT
ATCTGGGTGTTCTCCTCATTCTCCCCCCCCCAGAATGCCAGTAGTAATTC
GTGAATAATTATGACCTTATGAATTAAAAAAATCACAAGAGTTGAAGACA
GCAGTTTCCAAGGAAAAATCACCACTGAAATGAAATACTAATGTACTAGC
AGTATTTGTGTCATCTTCCTCAAATCCGGAAATTTCTCTGGCTTCATTTT
TTTTTCTCTTAAAGTAAGATAATACTTTATGATCTGGTAGCTTGTTTATA
CCCATTTCATCAGTATGACAAAATGCCTTAGATAAAAACATGTAAGACAG
AAAACATTCATGGGCTCAAGCTTTAATATGTGGCCTCTGGACCTGTAGCA
AGACAAAATATCACTGTTAGGATCATGTGTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i08.g1 MSMg01no277_i08.g1 CHROMAT_FILE:
MSMg01no277_i08.g1 PHD_FILE: MSMg01no277_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:40 2005
         (239 letters)



>mm_chr4_93321456_93322094
          Length = 639

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctcagcctgaatagttgacagcaccaaaggaaattgaaggaggctctcctcatttggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gcctcagcctgaatagttgacagcaccaaaggaaattgaaggaggctctcctcattcggt 260

                                                                       
Query: 61  gctgcacaatctttgaattcagtaggggggccatttacaatgacatagtactggtttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgcacaatctttgaattcagtaggggggccatttacaatgacatagtactggtttgaa 320

                                                                       
Query: 121 gaatgatcactcccaccatagcatgcttttatcacttagggagagcactgcactttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgatcactcccaccatagcatgcttttatcacttagggagagcactgcactttcttt 380

                                                                     
Query: 181 ttacacaaggatattatgctcctccccctcccactgcctagaatatctgggtgttctc 238
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacacaaggatattctgctcctccccctcccactgcctagaatatctgggtgttctc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)