BAC Information

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BAC

Clone NameMSMg01-277M14
Chromosome4 (Build37)
Map Location 137,551,724 - 137,695,079
singlet/doubletdoublet
Overlap geneEif4g3
Upstream geneZbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558
Downstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277M14.T7 (MSMg01no277_m14.b1)MSMg01-277M14.TJ (MSMg01no277_m14.g1)
ACCAG415590AG415591
length740747
length of high quality
(start - end)
233 (124 - 356)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no277_m14.b1 PHD_FILE: MSMg01no277_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005CHROMAT_FILE: MSMg01no277_m14.g1 PHD_FILE: MSMg01no277_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,551,724 - 137,551,956)(137,694,796 - 137,695,079)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCGTTCTTATCTTAAGATTGTTTTTCTTGATGGTCTGTCTGTGTTGG
TAGGTTTCTGTCTCCTGACACGTGAGTTGTTCCTTACCTGCCTCTTTAAG
CTGTTAGGGAGTTAACCAGAGGGATTGCACACTGTGTGTTCTGGACAGAC
AGACAGACCAGCAAGTAAGGGATCATAGTGTTGTACGTGACAGCGCTTGG
TGAAGTTGGTGGCTTCATTGGATACAGAGCGGGGGTGCTGAGTATCCCAA
GTATGCTTTTGCTCCTTATTTCTCACAGCTGAAGGACTGGAAAAACTTGA
AGCTGGTTAAATTTGTACCCCCCGCCCGCACCTCCAGTTAGATTTTTATC
TTTTCTTTAAAATAGAAGGAAGAAGCAAATGGGAAACNGGAAGGAATAAG
GTGTTCTCTGCAGAGAAGATTATTCTAAACCCTTCATGGCAACCTTGGAG
CCAGCCGTGCTGCTTGGAGGTTCTATTTTGCCCCATGTCATGGCGGCTGA
CATTTTATACTTGATGTATTCTACAATTCCTGCTTTACTCCGGCAAGATC
GCACAGCTAAATAAGCATCTATCGAGATAGTAAAGGAAGCGTGGGCTACG
GCCGGCTCAGAACGCAGCAGCGTGAAAATGTTGTCCCCTGGTACTGTATT
AGGTCAGAATCCCAGTATAGCAACTCTGCTTTTCAAACTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCATGGTGGACTACACAGAA
AAGGCTTGTTGCAAAAAGCCAACCCCCGCTACTGCTGTTACCACTGACGG
TAATTCCAGCCAATTGCTATCGGCACAGGATGAAATAAGGAGCCACAACG
TCAAACTGATTTTTTATTCATATTCACTCCTTCCATAGACGCAAGCAGAG
GGCTCGAGGCACTAGGACACCGAGCCTGTCCTTGCCTTTCAGTCGAGAAT
TGGAGTGGAAGGCAGGGCTGCAGTTCTCGGCAACTTGGCCCTCTCAAGTC
CAGGCTGCCCTATGGTCNCTTCCCCCCACCCACCCTTGTTCAATGATAAA
ACTGTTTTTGCTGCTTTTCTGTATTTCAAGAAAATTTTTTAGATTGTGAA
GAGATTTTACTTTTTCACCACAATCTGATAATGAGAATGAAGAGAGTACG
GCTGCCAGCGGAGAAAGTATGAATTACAAGAGGCCCCTTCTCTTCCTTTC
AAATCACTGCGGACTCTGTGACTGATCCTCCAGTTTGAAGACAGTGTGCA
CAGAGTCCAGGGCTCAGGACACAAGTGACACAAAACTGTGTTATGTGCTT
TACCACGGCTGAGGTGTGACCAATGGCATTGTCTCAGGCTTATACATAAA
CAGAGTAGAATGTTCCAGCAATGGAATTCTCTGGTAGTTTCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_m14.b1 MSMg01no277_m14.b1 CHROMAT_FILE:
MSMg01no277_m14.b1 PHD_FILE: MSMg01no277_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:59 2005
         (233 letters)



>mm_chr4_137551524_137552156
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttgttccttacctgcctctttaagctgttagggagttaaccagagggattgcacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagttgttccttacctgcctctttaagctgttagggagttaaccagagggattgcacact 260

                                                                       
Query: 61  gtgtgttctggacagacagacagaccagcaagtaagggatcatagtgttgtacgtgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgttctggacagacagacagaccagcaagtaagggatcatagtgttgtacgtgacag 320

                                                                       
Query: 121 cgcttggtgaagttggtggcttcattggatacagagcgggggtgctgagtatcccaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcttggtgaagttggtggcttcattggatacagagcgggggtgctgagtatcccaagta 380

                                                                
Query: 181 tgcttttgctccttatttctcacagctgaaggactggaaaaacttgaagctgg 233
           |||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttttgctccttagagctcacagctgaaggactggaaaaacttgaagctgg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no277_m14.g1 MSMg01no277_m14.g1 CHROMAT_FILE:
MSMg01no277_m14.g1 PHD_FILE: MSMg01no277_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:59 2005
         (287 letters)



>mm_chr4_137694596_137695282
          Length = 687

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagccatggtggactacacagaaaaggcttgttgcaaaaagccaacccccgctactgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 aaagccatggtggactacacagaaaaggcttgttgcaaaaagccaaccgccgctactgct 425

                                                                       
Query: 61  gttaccactgacggtaattccagccaattgctatcggcacaggatgaaataaggagccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gttaccactgacggtaattccagccaattgctatcggcacaggatgaaataaggagccac 365

                                                                       
Query: 121 aacgtcaaactgattttttattcatattcactccttccatagacgcaagcagagggctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacgtcaaactgattttttattcatattcactccttccatagacgcaagcagagggctcg 305

                                                                       
Query: 181 aggcactaggacaccgagcctgtccttgcctttcagtcgagaattggagtggaaggcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aggcactaggacaccgagcctgtccttgcctttcagtcgagaattggagtggaaggcagg 245

                                                       
Query: 241 gctgcagttctcggcaacttggccctctcaagtccaggctgccc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctgcagttctcggcaacttggccctctcaagtccaggctgccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)