BAC Information

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BAC

Clone NameMSMg01-278B16
Chromosome4 (Build37)
Map Location 104,796,945 - 104,797,228
singlet/doubletsinglet
Overlap genenone
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513
Downstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B16.T7 (MSMg01no278_b16.b1)MSMg01-278B16.TJ (MSMg01no278_b16.g1)
ACCAG415820AG415821
length724726
length of high quality
(start - end)
317 (46 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no278_b16.b1 PHD_FILE: MSMg01no278_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005CHROMAT_FILE: MSMg01no278_b16.g1 PHD_FILE: MSMg01no278_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAAAGTGTTTTAATTTCTTTCTTAATTTCTGCCTTGACCCATT
TTTTTTTATTCAATAATGAGTTGTGCAATTTCCATGTGTGTGTGGGCTTT
CTGTTATTTTTGTTGTTGATATCCAGCTTTACTCAATGGTAGTCACAAAG
GATGTAGAGTGTTAGTTCAATTTTCTTGTATCTGTTGAGATTTGCTTTCT
ATCTGAGTATGTGGTCAAATTTGGAGAAAGATCCATGAAGTGCTGAAAAG
AAAGTGTATTCTTTTGTGTTTGGGTGAAATGTTTTGTAAATATCTGTCAG
GTCTATTTGTTTTATTATGCCACCCCCCACCACCATTTCTCTATGTAGCT
TTTGTCTAGACATCCTGTATACTGACAAGAGTTAGGGTATAGAAGTATCC
CAATATTGGTGTGTAAGAGTCACTTTGTAAATTAAGCTGCAGTAATGTTT
CTTTATGAACTTGGGTATTCTTGTGTTAAGAATTGCAATGTCCTCTTGGT
GTATTTTTCCATTGATGACTATATGTTTCCTTCCCTATCTCTTTCTATTA
ACTTTGGTTGGAAATCTATTTTGTCAAATATTAAAATGACTACACCAGCT
TGTTTTGTAGGTTCATTTACTTGGGATATCTTTTCCCATCCTTTTAACCT
GAGGTGATGTCTATCCTTGATGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCTCCAATTCATATAAGCTAC
TCATTTCTCTATAGCCAGTGGAAACAGCGCCTCATCTGATACCTCTCAGT
ACCTGCGATTCAATTGCCAATCCACAAATAAATGTTTACGCCACTCTCTT
CCATGACCTAGAGAAAAGAGCACTCTTTATTCAGTGTTGAGAAAATGCTG
TCAGGGGTTGGCGTTGCCAGAATGGCATGTTCCTTCTTCCTTAGACACTT
TGGCAACTCTTTCATGAGACAGGTCTGGGGTTTTCTGAATGAATCCAAAC
TTTGTAAAATGTTTTTTATACTCCCCCCCCCCCCAAGAGGNTGNTTTTTT
TTTTTTTTTTTGGTTTTTTTGGTTTTAAAAAGATTTCATTTGGTGGGTTG
GTTAAGAGTTTGGACAGAGATGCAATGGGAAATGGGCAGCTTTCAAAACT
GCAAAGAAGACTTCAGTGGTTAACTAAGAAGCGAAGTAAGGGCCCAGGAG
TGAGGAGGAGAGCCATGCACAGGACCCTTGTGGCAAGCACTCAGTGGAAG
AGTCTGAAGTACACAGCAGTTAGAAATGTACCCGTAGCCGGGCGTCGTGG
CGCACGCCTTTAATCCCGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGA
GTTCGAGGCCAGCCTGGTCTACAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b16.g1 MSMg01no278_b16.g1 CHROMAT_FILE:
MSMg01no278_b16.g1 PHD_FILE: MSMg01no278_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:20 2005
         (287 letters)



>mm_chr4_104796745_104797431
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctccaattcatataagctactcatttctctatagccagtggaaacagcgcctcatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 atttctccaattcatataagctactcatttctctatagccagtggaaaaagcgcctcatc 425

                                                                       
Query: 61  tgatacctctcagtacctgcgattcaattgccaatccacaaataaatgtttacgccactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgatacctctcagtacctgcgattcaattgccaatccacaaataaatgtttacgccactc 365

                                                                       
Query: 121 tcttccatgacctagagaaaagagcactctttattcagtgttgagaaaatgctgtcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcttccatgacctagagaaaagagcactctttattcagtgttgagaaaatgctgtcaggg 305

                                                                       
Query: 181 gttggcgttgccagaatggcatgttccttcttccttagacactttggcaactctttcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttggcgttgccagaatggcatgttccttcttccttagacactttggcaactctttcatg 245

                                                       
Query: 241 agacaggtctggggttttctgaatgaatccaaactttgtaaaat 284
           ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 agaaaggcctggggttttctgaatgaatccaaactttgtaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)