BAC Information

Click to search

BAC

Clone NameMSMg01-278D24
Chromosome4 (Build37)
Map Location 125,537,293 - 125,537,576
singlet/doubletsinglet
Overlap genenone
Upstream geneGm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D24.T7 (MSMg01no278_d24.b1)MSMg01-278D24.TJ (MSMg01no278_d24.g1)
ACCAG415925AG415926
length733736
length of high quality
(start - end)
316 (45 - 360)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no278_d24.b1 PHD_FILE: MSMg01no278_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:32 2005CHROMAT_FILE: MSMg01no278_d24.g1 PHD_FILE: MSMg01no278_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCTGACTAGT
TGTCTCCATTTTATCAAATGAGTAAAAAATGGGAGAAACAAGAGAGGCTT
ACTTAAGATCACACAGCTCAGGGGCTGGAGAGATGGCTCAGAGGTTAAGA
ACACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAGTCCCAGCAACCACAT
GGTGGTTCACAACCATCTGTAATGTTATCTGATTCCTCCTTCTTACAAGA
AGACAGATTTTNATACATTCAAANACATGACCCATTTTAAAAAAGCTCAA
AGCTCAGGGCTGGGGAGATCATAAAATAAAAAAAGTGCTTATGAGGCAAG
CACTGAATTTGGTCCCCAGTTTCCATATGGAAACAACAGCAAAGGAAACA
GGCGTGTGGCATTTATAACCCCAGCACAGGGAAGGTAGAGGCAGGTAGAA
CCCTGACGGAGATTCTAGTCAGTGAATTTCAGACTGGTGGGAAATCCTGT
CTCCAAAAAAAGTGCACAGCACCCTAAGAATGACATTTGATGCTGTCTGC
CAGCTGCTATATTTATACACACAACTTGTAAGCGGGAATCATACTTTATC
ATCCATCCATCCATCCATCCATCCTCCCATCCA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATAAGGCATGCAAAGAAGTCCAAG
AAATCCTAGAGAGCCAGATTGGACGCGGAGGAGGCACCTGCCAGCAGGAA
TCTCCCTTTTGAGAATAGGGAAGGTGCAGGTAGGGGGAAGAGCAATTACT
TTCCCAGGATTCAAACCACACTTGAGGGATACCCCCTCGGACCTCTTTCT
GCCCAAGGAAACTACAAAGACTTAAAGCAGGCTCTTAGCCTTCCAGGGGA
CAAGAGATCAAGAACAGGCCGGCCTCAGGTGGTTCAGACACAATGCCCAG
TGGCTTGACGGTTTTATTAGCACACACCCCCCCCACCATCTTGGCTCTGG
GTATTCCGGGCCATATCAGACAGAGGACGTAAGTGAGCAACGGCTGCGGG
ATGCTAACCTCAGATAACTCAGCCCTTGGCCCACCCACATCTAGGGCCTT
CTTTTCACACTGTGAAGCACCCTCTCTATGCCAGGCATGCATGCCAGCCA
CTGCCATGCAAAGCAAGAGAGCCAAGGCCGCTGTCCTCTCCACACAACTC
TCTACAGGTGTCATGTACTTAAATGTTCCAAGTTCGCTGAGGCCTCTCTG
AGTTTGTATCTCCAGCTGAGATCTCACCCCTGAGGCCTGTCCCACACTCT
CAATGACCTCCCTCATGTCTGCTTGTGCATTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d24.g1 MSMg01no278_d24.g1 CHROMAT_FILE:
MSMg01no278_d24.g1 PHD_FILE: MSMg01no278_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:32 2005
         (288 letters)



>mm_chr4_125537093_125537780
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcataaggcatgcaaagaagtccaagaaatcctagagagccagattggacgcggaggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 tcataaggcatgcaaagaagtccaagaaatcctagagagccagattggatggggaggagg 260

                                                                       
Query: 61  cacctgccagcaggaatctcccttttgagaatagggaaggtgcaggtagggggaagagca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 cacctgccagcaggaatctcccttttgagaatagggaaggtgcaggtagggggaggagca 320

                                                                       
Query: 121 attactttcccaggattcaaaccacacttgagggataccccctcggacctctttctgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attactttcccaggattcaaaccacacttgagggataccccctcggacctctttctgccc 380

                                                                       
Query: 181 aaggaaactacaaagacttaaagcaggctcttagccttccaggggacaagagatcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaaactacaaagacttaaagcaggctcttagccttccaggggacaagagatcaagaa 440

                                                       
Query: 241 caggccggcctcaggtggttcagacacaatgcccagtggcttga 284
           |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 441 caggccggccacaggtggttcagaaacaatgcccagtggcttga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)