TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTCTGCCCAGAGTAAACTCTGCATAAATTTCACCATTGAAGAT
TAGTGATAGAAGAGAACTCCATTCGCTCTTTCTTCTGGCTTTATTTTTTA
TTTTTAATGCTGTCTGATTGCCCAAGGTATGTATGGAGGGTGTACACAGA
CGGTACACAGACCTAAGTCAGGTGTCTAAGCATCCCAGGAACTTCCCTTC
CAATATTCTTTTCTGAGCATATGCCCTCAGTTAGTTTTCCTCTTCATATG
ATCTGTGCTCCTGTTTATACCAAACTCTCGGCTCTGGCAGCATCCTCGTC
CAAAATTTTAAGTTCAGCCCCCCCCACTGGTCACATACCACCACCATTTT
CTACTCTTTATACTTTCTTTCCCTGATTACATTCCAATAGTGTGTAGGCA
TGAACACATGTGCACACATACACACATGTGCAGATTATAGTCCACTTGTA
GCAATAAGAGGATTCTCAGTACAATTCGTGGGAGTTGGATTTCTCCTGCC
ACCACATAGGTACAATTAATCCCAGTACTCGGGAGGCAGAGGCAGGCAGA
TTCCTGAGTTCAAGGCCAGCCTGGTCTAAAAAGTGAGTTCCAGGACAGCC
AGAGCTACACAGAAAAACCCCGTCTCAAAAAACCAAATAAAAAAAAAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAACTGTGGACCATGTGTTCA
AATATATGTTTAAAGGATCCACTCTCATTCAAACCACATCTATATAGGAA
TATATCACATTAAATACCTTCTAAGGATAATTAAGATTAAAATGTTAGAA
GCATATTTGAATTTTTATAATACTTCTTAGCATTTTTAAATTGCATATGT
ATTTAAACTAAAAATAAAATACAACTTTACACTAGCCTGCTCAAACTTAA
AAATTAAGCATATTCATAATATATGGCCAAGGCAGCTATTATTTTCTTTA
AATTTACTTATTTGTGAAACCCGGCTNACCCACCTAGCATCGTTTCCCTG
AGGTCATGCTTCTTGTCGCAACAGAATAGAATTCAAGTGCGTGTGTGTTG
GCTCCAAGGCTTTACAAGAGTAAGTCCTTGATTTCTTTGGCCCACAGCAA
TATCAAATTCTGTGTATGAGAAAAGGCTTTCAATATAAACTGTTATGATG
CATACTAACACAAAAATTTCTGAAGATATGAGAATTCTAACCCGGTGATG
GAGGTCAGTGAGTAGGTGGGGAAAATGAAAGAAGTGCGAGAGGACAGAAG
CCATCAGTGAGGTGAGAAGAGAGCTTCCCCCAAGGAGAGAGGGAAGGAAG
GTTAA

Query= MSMg01no278_e21.b1 MSMg01no278_e21.b1 CHROMAT_FILE:
MSMg01no278_e21.b1 PHD_FILE: MSMg01no278_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:36 2005
         (306 letters)



>mm_chr4_66511367_66512072
          Length = 706

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcacataccaccaccattttctactctttatactttctttccctgattacattccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcacataccaccaccattttctactctttatactttctttccctgattacattccaat 260

                                                                       
Query: 61  agtgtgtaggcatgaacacatgtgcacacatacacacatgtgcagattatagtccacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgtaggcatgaacacatgtgcacacatacacacatgtgcagattatagtccacttg 320

                                                                       
Query: 121 tagcaataagaggattctcagtacaattcgtgggagttggatttctcctgccaccacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaataagaggattctcagtacaattcgtgggagttggatttctcctgccaccacata 380

                                                                       
Query: 181 ggtacaattaatcccagtactcgggaggcagaggcaggcagattcctgagttcaaggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtacaattaatcccagtactcgggaggcagaggcaggcagattcctgagttcaaggcca 440

                                                                       
Query: 241 gcctggtctaaaaagtgagttccaggacagccagagctacacagaaaaaccccgtctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctggtctaaaaagtgagttccaggacagccagagctacacagaaaaaccccgtctcaa 500

                 
Query: 301 aaaacc 306
           ||||||
Sbjct: 501 aaaacc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no278_e21.g1 MSMg01no278_e21.g1 CHROMAT_FILE:
MSMg01no278_e21.g1 PHD_FILE: MSMg01no278_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:36 2005
         (324 letters)



>mm_chr4_66617669_66618392
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 320/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaatagaattcaagtgcg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 524 acctagcatcgtttccctgaggtcatgcttcttgtcgcaacagaatagaattcaagtgtg 465

                                                                       
Query: 61  tgtgtgttggctccaaggctttacaagagtaagtccttgatttctttggcccacagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtgtgttggctccaaggctttacaagagtaagtccttgatttctttggcccacagcaat 405

                                                                       
Query: 121 atcaaattctgtgtatgagaaaaggctttcaatataaactgttatgatgcatactaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atcaaattctgtgtatgagaaaaggctttcaatataaactgttatgatgcatactaacac 345

                                                                       
Query: 181 aaaaatttctgaagatatgagaattctaacccggtgatggaggtcagtgagtaggtgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 344 aaaaatttctgaagatatgagaattctaacccggtgatggaggtcagtgagtaggtggga 285

                                                                       
Query: 241 aaaatgaaagaagtgcgagaggacagaagccatcagtgaggtgagaagagagcttccccc 300
           ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 aaaatgaaagaagtgagagaggacagaagccaccagtgaggtgagaagagagcttccccc 225

                                   
Query: 301 aaggagagagggaaggaaggttaa 324
           ||||||||||||||||||||||||
Sbjct: 224 aaggagagagggaaggaaggttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)