BAC Information

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BAC

Clone NameMSMg01-278H05
Chromosome4 (Build37)
Map Location 137,330,484 - 137,484,105
singlet/doubletdoublet
Overlap geneAkp2, Ece1
Upstream geneEphb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap
Downstream geneLOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278H05.T7 (MSMg01no278_h05.b1)MSMg01-278H05.TJ (MSMg01no278_h05.g1)
ACCAG416071AG416072
length718754
length of high quality
(start - end)
244 (51 - 294)234 (125 - 358)
definitionCHROMAT_FILE: MSMg01no278_h05.b1 PHD_FILE: MSMg01no278_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:47 2005CHROMAT_FILE: MSMg01no278_h05.g1 PHD_FILE: MSMg01no278_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,330,484 - 137,330,723)(137,483,873 - 137,484,105)
sequence
GACTCACAATTCAAAACGGAGCCGCGGAATTCTACAGTTTCAGAAAGAAA
CCCAAGGGCCTAGCCCAGATAGGAGAACACTCTGCCACTGAGTTATACCC
CCACTGGTGCTTTGAGGCAGGTACTCATGTGGTCGTCCTCATCTTAGGGT
ACACAGAGCGGTGAAAGGACTAAGATCACGCACAGGAACAGCAGAGCTAG
GTCCAAAGTTTTCAACTCCAAAGTTCAAAAACTGTTTGCCATTGTGCTGG
GCTGAAACGGCTGAGGTTTTAGGAGACGCCACTCAACACAGGCCTATTTT
TGGGGGCAGACCAAGACTTTCGGGTTTTTCCCCAAATTTGTTATGGGACC
CTTACACATAGTCACATAAGTCACACAGAATGGGGGCAAGTACTCAGGGT
CTCTGTTGCCAGGGTGTTGGAGTCAGCAGGCAAGACTGATTGAACCAGAG
GCACGCAGCTGGTACAAAAGCCTGGAGGCCACGAAAGACTGGAAGGACTG
TGAGTGACCCAGTGTGTGCCATGGCTGAGGAGGAGACTGTGTGTGTCTTC
TTCTATGGCTATTATTATTAAGACTGGCTCTCTATATTATTATTAATAAT
ATAGGATCCTCTCTATCTATATCCCTGGCTGTCCTGAAACTCACAGTCAC
TCTCTTCAGACCCCCCAGAAGATTTTTTTTTTTCCCTTACCCACCCCCCT
TTATTTTTTTTCCGCCTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAGCCACCAGAAGGGCAGCT
GTGTTTCTCTGAACTGGGGCCACCCCCCATGCTCAGGCCCCAAACCACTG
CATGCGAGTCTACACTCACAGTGACCTTCTATGTCAGAGAGCACTGAGAG
CTGGGCTTAACAGAGTTGGGAACTGTGGCATACACGGAGCCCTGGACAAG
CAGCCAAGCTGGTCTGTAGGGGGGCGGGGAGGGGGGTACGGGGCTGTATG
GCTTTAGAACTTTGCAGTGTGTTCCTGATGTCACCAGGCCCTGCAGGTTA
CCCATGTTAAGATCNNCGCACGAACGNANACGCACAGGGATATTTTCCTA
TCATCACCTTGACCCAGAAAGACAAAAAAGATAAAAAGTCTTAGCCCAGG
ACGGGAGGCCACTCCCCATGACATCTGACAGCTGCCTCAGATTGGCTGGG
GTGGGATTGGGGCGTCCTGAGAAGCTACTGTGAACTGCGGTCGAAAGGTA
GTATATGCAGCCTAGCAACAGCCATGGCTCTGATGTTGTTTTGTACCACA
CAGACAAGGCGTCCTTTCACCACTTAGCTCCTGAAGGTTTTGGCCTGCCT
ATAAAGAAGTTGTCCAAACAGAACTTCTTTCTTATCCTCTTGCCACGACT
TTCTCCACTATACAATATTTTCGCCATCTTTTTATCCACCTCTTTCTTGG
TCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_h05.b1 MSMg01no278_h05.b1 CHROMAT_FILE:
MSMg01no278_h05.b1 PHD_FILE: MSMg01no278_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:47 2005
         (244 letters)



>mm_chr4_137330280_137330923
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   agggcctagcccagataggagaacactctgccactgagttatacccccactggtgctttg 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 agggcctagcccagataggagaacactctgccactgagttataccaccactggtgctttg 264

                                                                       
Query: 65  aggcaggtactcatgtggtcgtcctcatcttagggtacacagagcggtgaaaggactaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcaggtactcatgtggtcgtcctcatcttagggtacacagagcggtgaaaggactaag 324

                                                                       
Query: 125 atcacgcacaggaacagcagagctaggtccaaagttttcaactccaaagttcaaaaactg 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcacgcacaggagcagcagagctaggtccaaagttttcaactccaaagttcaaaaactg 384

                                                                       
Query: 185 tttgccattgtgctgggctgaaacggctgaggttttaggagacgccactcaacacaggcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgccattgtgctgggctgaaacggctgaggttttaggagacgccactcaacacaggcc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_h05.g1 MSMg01no278_h05.g1 CHROMAT_FILE:
MSMg01no278_h05.g1 PHD_FILE: MSMg01no278_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:47 2005
         (234 letters)



>mm_chr4_137483673_137484306
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccatgctcaggccccaaaccactgcatgcgagtctacactcacagtgaccttctatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccccatgctcaggccccaaaccactgcatgcgagtctacactcacagtgaccttctatgt 374

                                                                       
Query: 61  cagagagcactgagagctgggcttaacagagttgggaactgtggcatacacggagccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagagagcactgagagctgggcttaacagagttgggaactgtggcatacacggagccctg 314

                                                                       
Query: 121 gacaagcagccaagctggtctgtaggggggcggggaggggggtacggggctgtatggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gacaagcagccaagctggtctgtaggggggcggggaggggggtacggggctgtatggctt 254

                                                                
Query: 181 tagaactttgcagtgtgttcctgatgtcaccaggccctgcaggttacccatgt 233
           |||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 253 tagaactttgcagtgtggccctgatgtcaccaggccctgcaggttacccatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)