Query= MSMg01no278_j16.b1 MSMg01no278_j16.b1 CHROMAT_FILE:
MSMg01no278_j16.b1 PHD_FILE: MSMg01no278_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:59 2005
(310 letters)
>mm_chr4_82226586_82227300
Length = 715
Score = 561 bits (290), Expect = e-164
Identities = 305/312 (97%), Gaps = 5/312 (1%)
Strand = Plus / Minus
Query: 4 ggaattctatgttt--ttttttttttaaataagaagtaaaaatctggatgctgggtagga 61
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattctatgttttgttttttttttaaataagaagtaaaaatctggatgctgggtagga 456
Query: 62 tggaaactgttggg---tttttttttcagttttattcaaaggagatgattaataaatctg 118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggaaactgttgggttttttttttttcagttttattcaaaggagatgattaataaatctg 396
Query: 119 cccaccggtcatgctctagagaattacagaaactcaagcctgcctcttcatctaactgta 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cccaccgatcatgctctagagaattacagaaactcaagcctgcctcttcatctaactgta 336
Query: 179 gcatggtttcttacctttcccctctgggggcatcagacttctgctcacagttacttttaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcatggtttcttacctttcccctctgggggcatcagacttctgctcacagttacttttaa 276
Query: 239 gtgctggagtgtttcctggcctgatggcaggtattgtatttcagggtcccttgttttgtg 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 275 gtgctggagtgtttcctggcctgatggcaggtattgtatctcagggtcccttgttttgtg 216
Query: 299 tccctgtgatca 310
||||||||||||
Sbjct: 215 tccctgtgatca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 715
Length adjustment: 9
Effective length of query: 301
Effective length of database: 706
Effective search space: 212506
Effective search space used: 212506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_j16.g1 MSMg01no278_j16.g1 CHROMAT_FILE:
MSMg01no278_j16.g1 PHD_FILE: MSMg01no278_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:59 2005
(283 letters)
>mm_chr4_82093562_82094244
Length = 683
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Plus
Query: 3 gggattcagacaccttcatcagcatatgcccacattccttgcatcctagttaagatacca 62
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 gggattcagacaccttcatcagcatatgcccacattccttgcatggtagttaagatacca 262
Query: 63 gttcatttttgcacttatcagtatgttttgtcagttgctacatgatttacaagggtgcat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttcatttttgcacttatcagtatgttttgtcagttgctacatgatttacaagggtgcat 322
Query: 123 acactctgtttttaaaactgtggttttgaaaactagtaatccttatcgcttagtgagaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acactctgtttttaaaactgtggttttgaaaactagtaatccttatcgcttagtgagaga 382
Query: 183 aactatttcactccctaacgcacaatacagagaattaaaaatacgacctactttgtaatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aactatttcactccctaacgcacaatacagagaattaaaaatacgacctactttgtaatc 442
Query: 243 tttcttctcctaggagaagcataaaaaaatctcccaggact 283
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttcttctcctaggagaagcataaaaaaatctcccaggact 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
