BAC Information

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BAC

Clone NameMSMg01-278M20
Chromosome4 (Build37)
Map Location 75,009,674 - 75,009,994
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
Downstream geneLOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278M20.T7 (MSMg01no278_m20.b1)MSMg01-278M20.TJ (MSMg01no278_m20.g1)
ACCAG416335AG416336
length706713
length of high quality
(start - end)
321 (378 - 698)263 (451 - 713)
definitionCHROMAT_FILE: MSMg01no278_m20.b1 PHD_FILE: MSMg01no278_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005CHROMAT_FILE: MSMg01no278_m20.g1 PHD_FILE: MSMg01no278_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGAGAACTAACTGGAATTGGGGTCATTTTAATGTCAAGGTAGA
TACCTAGTTCAATGGAAACACCCAGGAATCCATGATGGTGATCCTAGGTA
AAACTCCTAGTGGTGGGCGACAGAGACCCTGAAATGGCCATCTTCTATAC
CAGGCAAGACTTCCAGTTAAGGGATTAGGGCAATAGTTCAGCCACAAAAC
CTTTGACCTACAACTTGCCCTGCCTTCAAGAAGTGTCCATTAAAGATGGC
ACAGAAATTGTAGGAGTGGTTAACAAATGACAGGTCCACCTTGAGACTCA
TGCCTTTATTATGGAAACCACCCCTGCCATTGCCTGAAGGGCCAGGACCC
AGAGGCTGGATAGACCACAGACCTAAGAAAAAAACAAATGGGACCATATT
GTTGAAATTTTGGGGGCATAATATGCCTATCATGCTATATAAAAGATGGT
ATCTCTTAGAAGATGCCCTGGTCTTCTCGATATTATGACTTTTCTGTCTT
CTCTTCTCCCTTGAGCTTAAAGTATACAGTTTGAATTGTACCTACTTATA
TTAGACATCACATGTACGTTAATTCTCTGTGTTTTGGCCACTGTGGGTAT
CTGTAACACTCCAAATATGCTACAAAAAGAAGCTTCTTTGATGAGAACAG
AGAAAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATACCTAAACATGATAAA
AGCAATCTACAGCAAACCAGTAGCCAACATCAAATTAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATAAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACGTTTTCAACATAGTACTTGAAGTATTAGCTAGAGCAATTTGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCC
ACCAGAGATTTCTTAAACCCGCCCCCCCCCTTCGGTGAAGTAGCTGGATA
TAAAATTAACTCAAACAAGTCAAAGAGAACTTTCTCTATACGAAGAAGAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACATCCCTCTCAATAGTGACAA
ATAATATAAAATATCTCGGCGTGACTATAACTAAGGAAGTGAAGGATCTG
TATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAG
AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAA
AAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATC
AAAATTCCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_m20.b1 MSMg01no278_m20.b1 CHROMAT_FILE:
MSMg01no278_m20.b1 PHD_FILE: MSMg01no278_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:15 2005
         (321 letters)



>mm_chr4_75009551_75010271
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgcctgaagggccaggacccagaggctggatagaccacagacctaagaaaaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 cattgcctgaagggccaggacccagaggctggatagaccacagacctaagaaagaaacaa 385

                                                                       
Query: 61  atgggaccatattgttgaaattttgggggcataatatgcctatcatgctatataaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgggaccatattgttgaaattttgggggcataatatgcctatcatgctatataaaagat 325

                                                                       
Query: 121 ggtatctcttagaagatgccctggtcttctcgatattatgacttttctgtcttctcttct 180
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtatctcttacaagatgccttggtcttctcgatattatgacttttctgtcttctcttct 265

                                                                       
Query: 181 cccttgagcttaaagtatacagtttgaattgtacctacttatattagacatcacatgtac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 cccttgagcttaaagtatacagtttgcattgtacctacttatattagacatcacatgtac 205

                                                                       
Query: 241 gttaattctctgtgttttggccactgtgggtatctgtaacactccaaatatgctacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttaattctctgtgttttggccactgtgggtatctgtaacactccaaatatgctacaaaa 145

                                
Query: 301 agaagcttctttgatgagaac 321
           |||||||||||||||||||||
Sbjct: 144 agaagcttctttgatgagaac 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)