BAC Information

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BAC

Clone NameMSMg01-278N07
Chromosome4 (Build37)
Map Location 54,154,726 - 54,270,405
singlet/doubletdoublet
Overlap genenone
Upstream geneAbca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278N07.T7 (MSMg01no278_n07.b1)MSMg01-278N07.TJ (MSMg01no278_n07.g1)
ACCAG416357AG416358
length715724
length of high quality
(start - end)
288 (69 - 356)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no278_n07.b1 PHD_FILE: MSMg01no278_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:17 2005CHROMAT_FILE: MSMg01no278_n07.g1 PHD_FILE: MSMg01no278_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,154,726 - 54,155,009)(54,270,120 - 54,270,405)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTTACCTCTCACATTTTTTTACTGTAATTATCAGAGTATATG
ATACTTTGCAAATGTATGTCTCTTTTAGTAAAGCATTTGTTTCATCTCTG
TAGGCATACATACCAAAAGGCATCTACTGGAAAGAAATGGATTGCTTATT
GTAGGTGAAAAATCAAACCTTTTTGAAATCTCAAACTTGTGTTTGATCTA
CCATCTGAAAGTGCAACAGTGGATGCTGCTCTACAGTTTGTGATTCAATC
TCACTCAAAGGCTCTTGTGCTGAAGGCCTGGTACCCTGCTATCAGATCAG
TCATTGATATTTGATTGCATCATGCATGGAAGCTCTAAGTATTAATCCAT
TGATGGCTTCTTAATTGAGTGGGGTGGAAGGCATGTGCACTGTGGTGATT
GGGGCTGGGCTGGTGAAAGTAGAACTCTGAGGGTATGGCTTTAATTGGTT
TATCTTGGCCATCACTGCTTCCATTTTCTGTCTTTTCGCTTCCTGGCTGT
CAGGAGATGAGCACCTCTGTCTCAACATGTACTTTCTACTGTGTTTATGT
AGCTAGTTAACTATGGGCTGAAACCTCTGGAACTGGGGTCGCATACAAAT
CTTCTCTATGAGTCATTTTTCTGTCATTTTGCCTCAGCGACCACGAACTA
ATTCTTATGACCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGACACAAAAAATTCCTGAAAAACTCAAACCTAGATTTT
CAAGCAATCCATATGTCTGACCCCGTGTTTCTGTCAAACATATTTTGTTT
CATGGCCTAGATTTTCATAATTAAATGAAGTCAAATGGGAACACAAGCAA
GCTGAAAATAAGCATTGTGTTAGTATTAACTGGTACCAGTTGGTACATAC
AGTAAGTTCTTTTAAGAATTGCCTCTTAGGGGGGAAAAACATTACCACAC
ACTGCGGACATAGAATGCATGGACAAATTCAATTGGCAACTCTACTTCTA
TATTAGAGTATTTTTTTTACCCCCCCCACCTTTTGGAGTTAGATGTTTGA
AAGAACAGTCAAATGGTACAGAAATATAAACTTTTGTGAATAGAGTCCAC
GATCAAAATCAAGGATCTCCTCCAGCAGGATTCTTGTTCAAAGTGATCAT
TGTTATATATTGTGAGCTCAGACTTCTTCATATTCTCACTCTAAAAAAGC
TGCTAGTAGCCAAGCAAGTGGTAACTGCCTGCCAACCCAACATTTAGAAG
GCTGAGATTGGAGATTTATAAGTTCAGACAGCCCAAGATACATAGTGAGA
TGCTAAATAGGTATATAGATCAATGATAGAAAGAAAGAAAGAAAGAAAGA
ATGTAAGAAAGAATCATAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_n07.b1 MSMg01no278_n07.b1 CHROMAT_FILE:
MSMg01no278_n07.b1 PHD_FILE: MSMg01no278_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:17 2005
         (288 letters)



>mm_chr4_54154522_54155209
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttttttactgtaattatcagagtatatgatactttgcaaatgtatgtctcttttagtaaa 64
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 205 ttttttactgtaattatcagagtatatgatactttgcaaatgtaagtatcttttagtaaa 264

                                                                       
Query: 65  gcatttgtttcatctctgtaggcatacataccaaaaggcatctactggaaagaaatggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatttgtttcatctctgtaggcatacataccaaaaggcatctactggaaagaaatggat 324

                                                                       
Query: 125 tgcttattgtaggtgaaaaatcaaacctttttgaaatctcaaacttgtgtttgatctacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcttattgtaggtgaaaaatcaaacctttttgaaatctcaaacttgtgtttgatctacc 384

                                                                       
Query: 185 atctgaaagtgcaacagtggatgctgctctacagtttgtgattcaatctcactcaaaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctgaaagtgcaacagtggatgctgctctacagtttgtgattcaatctcactcaaaggc 444

                                                       
Query: 245 tcttgtgctgaaggcctggtaccctgctatcagatcagtcattg 288
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttgtgctgaaggcctggtaccctgctatcagatcagtcattg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_n07.g1 MSMg01no278_n07.g1 CHROMAT_FILE:
MSMg01no278_n07.g1 PHD_FILE: MSMg01no278_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:17 2005
         (286 letters)



>mm_chr4_54269920_54270605
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctgaaaaactcaaacctagattttcaagcaatccatatgtctgaccccgtgtttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||
Sbjct: 486 aattcctgaaaaactcaaacctagattttcaagcaatccatatgtcagaatcagtgtttc 427

                                                                       
Query: 61  tgtcaaacatattttgtttcatggcctagattttcataattaaatgaagtcaaatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtcaaacatattttgtttcatggcctagattttcataattaaatgaagtcaaatgggaa 367

                                                                       
Query: 121 cacaagcaagctgaaaataagcattgtgttagtattaactggtaccagttggtacataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cacaagcaagctgaaaataagcattgtgttagtattaactggtaccagttggtacataca 307

                                                                       
Query: 181 gtaagttcttttaagaattgcctcttaggggggaaaaacattaccacacactgcggacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtaagttcttttaagaattgcctcttaggggggaaaaacattaccacacactgcggacat 247

                                                         
Query: 241 agaatgcatggacaaattcaattggcaactctacttctatattaga 286
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 246 agaatgcaaggacaaattcaattggcaactctacttctatattaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)