BAC Information

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BAC

Clone NameMSMg01-279A10
Chromosome4 (Build37)
Map Location 104,759,792 - 104,900,257
singlet/doubletdoublet
Overlap genePrkaa2, Ppap2b
Upstream geneDab1, C8b, C8a, 1700024P16Rik, LOC100039513
Downstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279A10.T7 (MSMg01no279_a10.b1)MSMg01-279A10.TJ (MSMg01no279_a10.g1)
ACCAG416502AG416503
length745746
length of high quality
(start - end)
693 (45 - 737)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no279_a10.b1 PHD_FILE: MSMg01no279_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:31 2005CHROMAT_FILE: MSMg01no279_a10.g1 PHD_FILE: MSMg01no279_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,759,792 - 104,760,482)(104,899,979 - 104,900,257)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGCACATAACCCACACAAAGACACACACATATAAATGATTAAA
AATGAACTCAACCTTTAAAAGACCTTTTAGAGATGGCTTTAAAATTAGTA
TACTATGAAGTTTAACACAGTAGTGATATCATAAACATAAGTGGATAAGA
CATAAAATACCCTGCCATTGAAATGTTATGGTAGTGCCATGGAATCACAC
TTGAATTCAAAATTGTCATAGACAGCTTCATAAATGGAAGCAAATGTGGT
ACTTTGGAAAACCACAGTAGAGGGATCCAAACAGTAGTCCTGGAACCACA
AAACGAATGTTTATAACAACAACACATCATATTCTGACAGCAAAGGTAGT
GGTAAGAATTTTCTAGCAATAAGTGCTCATATAATATAAAAAAAGATTTA
AAGTACACAGCCTAATCAGTTATCTTAAGACCCAGGAAAGGAAGAACAAA
CCAAACGGAAAAGGAGAAAGAACAAAAGTCAAAGTAGAAATAAACATAAT
AGAACAAATACAAAAGATAAACAAAACGGAAGTTTTGTCTTTTCAATTTT
TTAATTTTATATACTTTATTACGGAAAATAACGAATAAATAACATTGGTT
TTATAAAAAGATAAGTAAATTCAATACACCTCCAGTTAGACACTATCAAA
AATGAGAAGATTCAAATAAAATTAGAGGTGAAAAAAAAAAAAAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACAGAGATGTGGGTGTGG
ACTTCGGAGAAGCATTGGCTTTCTTCTAGTTCGGTTTCAACCCCATCAAC
CTCAGCACCGGTTATCATGAGAACTCTTAAAATTGGCATGATTCTGTTGG
GCTCCAGCCTTCTAATATCTTGGCTTCCCAAGGTATTGTTTTAGGGAAGT
GATTCTGACCTACTGCTAAGTTCCAATGTTTGGCCATTCTGTGATCGGAT
GCAAGGGCGGAAGATGGTTTACTTACACAAACACCCTGGACAATATCACC
CTTCCTCCAGTATTTTGACTACCACACACAAGGAGGCTCTAGGAATCCCA
CTCACACGATGCGGAGATAAGAAGCTCACAGTGTGAGGCCCCTTGCAATG
CCTCCTCTGTACTGCTCTCTGGCCACTGCCTACCTGTCTCCTACTTCCTT
CTATCCAACCAGAGGTACTGGTCAGAAAGCTTTAGTCTTTAAAGTAAATG
GACTTGTGTCTCAAATCCAAGCCTTGCCATTACTGGGGACACAATACCTA
GCTCGGGAGTTACAGGGTACAAATGTGGGACAGTGCAGGGAAAAACTAAG
TGTCAGCCATCATCAATGGCTGCTGCACTCACTGCCTAGTTATATAAAAA
TTACTTATTTTCTCTGTGGGAAGGCAAGTAAGAACTAGGAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_a10.b1 MSMg01no279_a10.b1 CHROMAT_FILE:
MSMg01no279_a10.b1 PHD_FILE: MSMg01no279_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:31 2005
         (693 letters)



>mm_chr4_104759590_104760682
          Length = 1093

 Score = 1313 bits (679), Expect = 0.0
 Identities = 688/691 (99%), Gaps = 1/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatgcacataacccacacaaagacacacacata-taaatgattaaaaatgaa 62
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 ggaattcacatgcacataacccacacaaagacacacacataataaatgattaaaaatgaa 262

                                                                       
Query: 63  ctcaacctttaaaagaccttttagagatggctttaaaattagtatactatgaagtttaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcaacctttaaaagaccttttagagatggctttaaaattagtatactatgaagtttaac 322

                                                                       
Query: 123 acagtagtgatatcataaacataagtggataagacataaaataccctgccattgaaatgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acagtagtgatatcataaacataagtggataagacataaaataccctgccattgaaatgt 382

                                                                       
Query: 183 tatggtagtgccatggaatcacacttgaattcaaaattgtcatagacagcttcataaatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatggtagtgccatggaatcacacttgaattcaaaattgtcatagacagcttcataaatg 442

                                                                       
Query: 243 gaagcaaatgtggtactttggaaaaccacagtagagggatccaaacagtagtcctggaac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaagcaaatgtggtactttggaaaaccacagtagagggatccaaacagtagtcctggaac 502

                                                                       
Query: 303 cacaaaacgaatgtttataacaacaacacatcatattctgacagcaaaggtagtggtaag 362
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 cacaaaacgaatgttaataacaacaacaaatcatattctgacagcaaaggtagtggtaag 562

                                                                       
Query: 363 aattttctagcaataagtgctcatataatataaaaaaagatttaaagtacacagcctaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aattttctagcaataagtgctcatataatataaaaaaagatttaaagtacacagcctaat 622

                                                                       
Query: 423 cagttatcttaagacccaggaaaggaagaacaaaccaaacggaaaaggagaaagaacaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagttatcttaagacccaggaaaggaagaacaaaccaaacggaaaaggagaaagaacaaa 682

                                                                       
Query: 483 agtcaaagtagaaataaacataatagaacaaatacaaaagataaacaaaacggaagtttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtcaaagtagaaataaacataatagaacaaatacaaaagataaacaaaacggaagtttt 742

                                                                       
Query: 543 gtcttttcaattttttaattttatatactttattacggaaaataacgaataaataacatt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtcttttcaattttttaattttatatactttattacggaaaataacgaataaataacatt 802

                                                                       
Query: 603 ggttttataaaaagataagtaaattcaatacacctccagttagacactatcaaaaatgag 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ggttttataaaaagataagtaaattcaatacacctccagttagacactatcaaaaatgag 862

                                          
Query: 663 aagattcaaataaaattagaggtgaaaaaaa 693
           |||||||||||||||||||||||||||||||
Sbjct: 863 aagattcaaataaaattagaggtgaaaaaaa 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no279_a10.g1 MSMg01no279_a10.g1 CHROMAT_FILE:
MSMg01no279_a10.g1 PHD_FILE: MSMg01no279_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:31 2005
         (281 letters)



>mm_chr4_104899779_104900459
          Length = 681

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagagatgtgggtgtggacttcggagaagcattggctttcttctagttcggtttcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gacagagatgtgggtgtggacttcggagaagcattggctttcttctagttcggtttcaac 420

                                                                       
Query: 61  cccatcaacctcagcaccggttatcatgagaactcttaaaattggcatgattctgttggg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cccatcaacatcagcaccggttatcatgagaactcttaaaattggcatgattctgttggg 360

                                                                       
Query: 121 ctccagccttctaatatcttggcttcccaaggtattgttttagggaagtgattctgacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctccagccttctaatatcttggcttcccaaggtattgttttagggaagtgattctgacct 300

                                                                       
Query: 181 actgctaagttccaatgtttggccattctgtgatcggatgcaagggcggaagatggttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 actgctaagttccaatgtttggccattctgtgatcggatgcaagggcggaagatggttta 240

                                                  
Query: 241 cttacacaaacaccctggacaatatcacccttcctccag 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttacacaaacaccctggacaatatcacccttcctccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)