TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGTTTTCCACAAAAAAATGAAATTTCAAATTCCCAAGAAATTGGAT
AGATCTAGGAATCCCCCATGTATAATTATATATTTGTGACTATATAACTC
AGATTCAGAAAGGCGAATTCTCCATACTCACCCTCACATGCTGCAGATCC
AAGCCTCTGATCTGACATTTACATGTATATTTGTGGGTGCGATTTTGGGA
ATAGGTCATGAACCTGGAAAGGGGCCATGAGAAGGGAGAGGTAATGCCAA
GGAAGAGTAGGTAGATGATAGATTGTGAGGAGCGAGTGTGGCAGCAGTCC
TTTATGGCACCTGCCACTGCAGCTAAGTCTTATGACTTGCACCTGACTTC
CTCATACACCTGAAAATAAGCCACGACCATCGAGAGAGCTGCGCAGGTGC
ACCATGATGCTGGCGGTGTAAACAAGTCCATATTTGGTGGAGACAAGCCC
CGCTGCCCTGATTGACTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCCTG
CCGTGAGTGGATGGGGGCTGAGAGTATATAAGCAGACCTCCCTGGGTGCT
CGGGAGTTCCCATAGCAGCATTGAGGTGTTCCTGCAATAAATGTTGTTGA
GAAGAATCCGACTGTGTTGGCCAAGGTGGGCGCAACAATAGATCATGTGA
CAATAAGTGGAATGTGCTTGGTGGGAGAGAGAAAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCAGGACTATAGAGGCCAAT
AGTGAAACCTTTCACTAGAGCCTTCCTCCTGCTTAGGTCAGCTCCATGGC
TTTGAAGAATCTCTCTGAGGTGGCAGACTGGGCACGCAACACCACTGAAC
ATTCAAAGATGTTTTGTCACTCTGATGAGATATTTTCAACATCTAGGAAG
TGAGAGTGAACAAGGAAGTCCAGGGCCCTGTTAGACAACACTGTGTATAT
CGAAGGCACAGGAGCGGAGGAGAATGAATGAGCCATGGACCCATAGTATT
CAGTGATGCACACAAACAAATGCTATGCTATTCATGGTGTTTTCATGGGT
TAAAGGCAAAATTCACAACAGTGGTTGGGAGTTCCAGAGGGGTGAAAGCA
TGAGACACAGAAGGGAGTGAGTCTTGAAGTAAAGGAAAACTTTTATATCC
TGATCTAAGAGATGGGCCATAGGCTGTAGTTGAGCATACACAATCACTCA
CAGTACCTGACATACATAGACATGAACATCAGTGTATATGGCAAAAAGAG
CTCACAGACACAAGCAGACAGACATCGTCACAGCTATTGTGTTACACAAT
GAGGCCATAAGGCATACCCAGAGAAACTCGTTCTGCCTGCTTCCATGACC
TTGGGTATGTGATTTTCTTTCTTAAGCCTTATTCTTTAGGCAN

Query= MSMg01no279_a13.g1 MSMg01no279_a13.g1 CHROMAT_FILE:
MSMg01no279_a13.g1 PHD_FILE: MSMg01no279_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:31 2005
         (664 letters)



>mm_chr4_47345881_47346944
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 661/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccaggactatagaggccaatagtgaaacctttcactagagccttcctcctgcttag 60
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctcaccagaactgtagaggccaatagtgaaacctttcactagagccttcctcctgcttag 805

                                                                       
Query: 61  gtcagctccatggctttgaagaatctctctgaggtggcagactgggcacgcaacaccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtcagctccatggctttgaagaatctctctgaggtggcagactgggcacgcaacaccact 745

                                                                       
Query: 121 gaacattcaaagatgttttgtcactctgatgagatattttcaacatctaggaagtgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaacattcaaagatgttttgtcactctgatgagatattttcaacatctaggaagtgagag 685

                                                                       
Query: 181 tgaacaaggaagtccagggccctgttagacaacactgtgtatatcgaaggcacaggagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaacaaggaagtccagggccctgttagacaacactgtgtatatcgaaggcacaggagcg 625

                                                                       
Query: 241 gaggagaatgaatgagccatggacccatagtattcagtgatgcacacaaacaaatgctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaggagaatgaatgagccatggacccatagtattcagtgatgcacacaaacaaatgctat 565

                                                                       
Query: 301 gctattcatggtgttttcatgggttaaaggcaaaattcacaacagtggttgggagttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctattcatggtgttttcatgggttaaaggcaaaattcacaacagtggttgggagttcca 505

                                                                       
Query: 361 gaggggtgaaagcatgagacacagaagggagtgagtcttgaagtaaaggaaaacttttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggggtgaaagcatgagacacagaagggagtgagtcttgaagtaaaggaaaacttttat 445

                                                                       
Query: 421 atcctgatctaagagatgggccataggctgtagttgagcatacacaatcactcacagtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcctgatctaagagatgggccataggctgtagttgagcatacacaatcactcacagtac 385

                                                                       
Query: 481 ctgacatacatagacatgaacatcagtgtatatggcaaaaagagctcacagacacaagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgacatacatagacatgaacatcagtgtatatggcaaaaagagctcacagacacaagca 325

                                                                       
Query: 541 gacagacatcgtcacagctattgtgttacacaatgaggccataaggcatacccagagaaa 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacagacatcttcacagctattgtgttacacaatgaggccataaggcatacccagagaaa 265

                                                                       
Query: 601 ctcgttctgcctgcttccatgaccttgggtatgtgattttctttcttaagccttattctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcgttctgcctgcttccatgaccttgggtatgtgattttctttcttaagccttattctt 205

               
Query: 661 tagg 664
           ||||
Sbjct: 204 tagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)