BAC Information

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BAC

Clone NameMSMg01-279C06
Chromosome4 (Build37)
Map Location 50,615,446 - 50,615,734
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C06.T7 (MSMg01no279_c06.b1)MSMg01-279C06.TJ (MSMg01no279_c06.g1)
ACCAG416582AG416583
length756755
length of high quality
(start - end)
623 (45 - 667)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no279_c06.b1 PHD_FILE: MSMg01no279_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:40 2005CHROMAT_FILE: MSMg01no279_c06.g1 PHD_FILE: MSMg01no279_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACCCAAGATATAATATACAATTTGCTAAACACATGAAATTCAAGAA
GAACGAAGACCAAAGTGTAGACACTTTGCCCCTTCTTAGAAATGGGAACA
AAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGATGAAA
AAATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAATCAG
CTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGG
ACCCAGATATAGTTGTCTCTTGTGAGTCTATGCCGGGGCCTAGCAAACAC
AGAAGTGGATGATCACAGTCATCTATTGGATGGGTCACACGGCCCCCAAT
GGAGGAGCTAGAGAAATTACCAAGGAGCTAAAGGGAACTGCAACCCTATA
GGTGGAACAACAATATGAACTAACCAGTACCCAGGAGCTCTTGTCTCTAG
CTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTAAAAAGAGAGG
CCCATTGGACTTGCAAATTTTATATGCCCCAGTACAGAGGAATGCCAGGG
CCAAAAAGGGGGAGTGGGTGGGGTAGGGGGATTGGNNNNNNNNNNTNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNTNTNNNN
NTTNTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTAACTCAGCATTAGATTTG
TTTGTAAGTGCTATGTTTTACAAAATTAAGGGCACAGAAGTTCATTAATT
CTGTTAGTGTAGAAATCCATTAAATCAATTACCCATCTAATTGCCCAGAT
AGTAGCTTATCCTTAAAGAATGAAGTGTCTAATGGTCAATGTACTTTATA
AGTATCCAATAATATTAAAAGTATGAAGATACTTACAGTCTAATTAAGAA
TAGCTCAAACTTAAGTGAACACTAAATAAAAGCTTAATGATGGATTACCC
TAATTATCTGATAATAGTCATTTCATATAGCTTAAAACTTTAATTCGTAT
TTAGGGTTAAAAACTTTACAAAAGAAGATTAAGATCATTCTGTTAAATTA
AACTTATACAAATTTATAAATATATGGCTACATAGAAAATATGTATTAGT
AAATTCTCAACTTCTAATTGCTAAATAGGCAGAAATATTTTTAAAACTTT
ACATTTTTGCATAATTATCACATGAGTTATTGTTCTTGTTATTTCTATAA
CTCTCTAACTCCCCAACCAATCCATGGTACTCTGACCTCCTCCTAATATT
ACTGAATATATTTAAAGTTGCTTGTATGTGTATATATTAAGAGATGACCA
TCTGAGACTGTTTACTTTATCAGAGTGCCCATCCCTAAAGAGATCTGATT
CTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c06.g1 MSMg01no279_c06.g1 CHROMAT_FILE:
MSMg01no279_c06.g1 PHD_FILE: MSMg01no279_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:40 2005
         (291 letters)



>mm_chr4_50615246_50615937
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttt-taactcagcattagatttgtttgtaagtgctatgttttacaaaattaagggcac 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttttgtaactcagcattagatttgtttgtaagtgctatgttttacaaaattaagggcac 430

                                                                       
Query: 60  agaagttcattaattctgttagtgtagaaatccattaaatcaattacccatctaattgcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaagttcattaattctgttagtgtagaaatccattaaatcaattacccatctaattgcc 370

                                                                       
Query: 120 cagatagtagcttatccttaaagaatgaagtgtctaatggtcaatgtactttataagtat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagatagtagcttatccttaaagaatgaagtgtctaatggtcaatgtactttataagtat 310

                                                                       
Query: 180 ccaataatattaaaagtatgaagatacttacagtctaattaagaatagctcaaacttaag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccaataatattaaaagtatgaagatacttacagtctaattaagaatagctcaaacttaag 250

                                                            
Query: 240 tgaacactaaataaaagcttaatgatggattaccctaattatctgataa 288
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaacactaaataaaagcttaatgatggattaccctaattatctgataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)