BAC Information

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BAC

Clone NameMSMg01-279E18
Chromosome4 (Build37)
Map Location 109,953,865 - 109,954,175
singlet/doubletsinglet
Overlap geneElavl4
Upstream geneEps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneLOC100040381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279E18.T7 (MSMg01no279_e18.b1)MSMg01-279E18.TJ (MSMg01no279_e18.g1)
ACCAG416696AG416697
length754607
length of high quality
(start - end)
315 (45 - 359)83 (76 - 158)
definitionCHROMAT_FILE: MSMg01no279_e18.b1 PHD_FILE: MSMg01no279_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:51 2005CHROMAT_FILE: MSMg01no279_e18.g1 PHD_FILE: MSMg01no279_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCAGCATGTCCACAATAGCTTTGGAGCATCAGTGTTAGGAACCA
ATCACTTTGGAAAGGAAATTGTTACAAAAGGAAGAAAATAGGAAAGCGAT
CAGCCAGCTAGCTAGGTATGGACATCCATTTAGCTTGGTGGTAATATTTA
TGTTGTTCATGAATTCATTAAAAAATAAACTACATTTTTGGTGCTCTTAT
CAGGCTAGTGCCTCGCTCTCCCACCCCTCCCAGGTCTCTCTTCTCCCCTC
TTTCTCCCCTAACCCGGAGATTCTGCCTCCACCATTTTTGCTTTGAACTA
GTCTTACGGATATCCTTGTAGCCCACACCTGAGATTAGCACTCACACACA
CACACACACACACACACACACACGCACACACACACGCACATGCACCAGTA
AAAATTGTCTCAAGACTCAAGAAATGCTGAGATTAATCAAAGAATCTTTA
AATAAATTTCAGTTAAGAAATCAGTAAAAATATTGAAGAAATATTGTTAG
TACATTGTGTTTACATCTTCGTTGCTGATGCTATTGTTAAAGGATACTTA
TTTTTAACCCCAGAAGTAGTTAAATACAAAACTAACATATGGGGTTTTGT
TAGTGAAAAAAAAATTACATGACTTACGTGTCCCCTGAAAATGACTTTTG
GTGGACTCTTGATTTGAAAATAGCATTTATTGAGTTTAAGTTTTCACCTA
TAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATGTTGGACTTCCTATCCCAACT
TTGAAACCCTGGGCTTCTTTAGTTTCTCCAATNGGAGATCTTTGTNNATT
TCAATTCTGGTATCTTTAGATAGAGCTTCCTGTCTTATCCCCGCCCACTT
TTGTTGTAGAGGAACAACCCTTTAAACGTGGGTTTTCTTAGGCTTGGGAA
AAATTTTTTCTTTGGGGGAAAAACACTTTTTTAAACCCCTTCTTTATAAA
AAGGCGTCCCCTTTTTTTTTTTCCCCAAAATAATTATTCCTCCCCCCCAA
CAAAAAAAAAAAATTTCTTTTTTTGGAGGGAGAAAAAACACACCTTCTGT
TTTGTGTGTGTTGACACCCCCCCCCCCCAACAAAAAAAAAATTTTTTTTT
TTTCTCTTCAAAGGGGCGGGGGGAAAAATATCTCATAAAAAAAAAAAAAT
TTTTTTTTTTTTTTCCCCCCACCCCCCCCCCCCCCCCNTTTGGGGGGGGT
GGGGGGGGGGGGGGGGGGGTGGNNNNNNNNTNNNNNNNNTNNAAAAAAAA
AAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_e18.b1 MSMg01no279_e18.b1 CHROMAT_FILE:
MSMg01no279_e18.b1 PHD_FILE: MSMg01no279_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:51 2005
         (315 letters)



>mm_chr4_109953661_109954375
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcagcatgtccacaatagctttggagcatcagtgttaggaaccaatcacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcagtcagcatgtccacaatagctttggagcatcagtgttaggaaccaatcacttt 456

                                                                       
Query: 65  ggaaaggaaattgttacaaaaggaagaaaataggaaagcgatcagccagctagctaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaaaggaaattgttacaaaaggaagaaaataggaaagcgatcagccagctagctaggta 396

                                                                       
Query: 125 tggacatccatttagcttggtggtaatatttatgttgttcatgaattcattaaaaaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggacatccatttagcttggtggtaatatttatgttgttcatgaattcattaaaaaataa 336

                                                                       
Query: 185 actacatttttggtgctcttatcaggctagtgcctcgctctcccacccctcccaggtctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actacatttttggtgctcttatcaggctagtgcctcgctctcccacccctcccaggtctc 276

                                                                       
Query: 245 tcttctcccctctttctcccctaacccggagattctgcctccaccatttttgctttgaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcttctcccctctttctcccctaacccggagattctgcctccaccatttttgctttgaac 216

                      
Query: 305 tagtcttacgg 315
           |||||||||||
Sbjct: 215 tagtcttacgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)