BAC Information

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BAC

Clone NameMSMg01-279H16
Chromosome4 (Build37)
Map Location 64,154,027 - 64,154,314
singlet/doubletsinglet
Overlap genenone
Upstream geneWhrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H16.T7 (MSMg01no279_h16.b1)MSMg01-279H16.TJ (MSMg01no279_h16.g1)
ACCAG416834AG416835
length765768
length of high quality
(start - end)
323 (46 - 368)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no279_h16.b1 PHD_FILE: MSMg01no279_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005CHROMAT_FILE: MSMg01no279_h16.g1 PHD_FILE: MSMg01no279_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAAGAGTCTCAAATGGCCAAGAAGCACTTAAAGAAATGC
TCAACACCCTTAGTCATCAGGAAATGCAAATCAAAATGACCCCGAGGTTC
TATCTTACACCAATCAGAATGGCTAAGATCAAAAACGCAAGTGACAGCAT
GTGCTGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTACTGGTGGT
ATTGCAAACTTGTACAACCACTCTGGAAATCAATCTGTTGATTCCTTAGA
AAACTGAAAATAATTCTACCTGAAGACCTAGCTGTACAGCTCCTGGGTAT
ATACCCAAAAGATACTTCTTTCATACCACAAGGACATGTGCTTCCTTATA
GTCATAGCAGCCTTATTAGTAATAGCTAGAAAATATAAATAACCCAGATG
TCCCTTAACCTAAGAATGGATACAAAAATTTGGTTCATTTTGTTATTAGT
CTATTGAGGTAGTAAATAGCTATAGTGCGATTAAATAGCTATTGAGCTAT
TAAAAACAAGGACATAATGGACTTTGCAGCCAAATGAATGGAACTGGAAA
AATATCATCCTGAGTTAGGTAACCCAGATCCAAAAAGATAGGCAAGGTAT
GTACTTACTGATTAGTGGATATTAGCTNAAAAGTACTGAATATCCATGAT
ACACCCCACAGACCCTAAGAAATTAAACAAGAAGGAACTCCCCAATGAAG
ATGGTTAAATCCCAC
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGTAACAAAATGCTTATGTC
TTCTTGTATATTGAGTGCAAGTATGAAAACCATGAAGCAATATAGAGATT
CCCAGTGCTAAATCAGCACTGTTCCTATGCCTGTGAGCCACAAATAGAAA
GAGAATTAACATATTTATTTTTATTTTTTTATATGGAATCTTGTTAGGTT
TTTTTTTCTGCTTAAATCATAACTTTGAGTTTCTTGGTGTTATTTGATTG
ACATTCTTTGCAAACTGTTCCCATATTTACATTAATACATACTCTAATTT
CTAATTCTAACAAGTGATATTATGTTTTACCCCCCCCCCCTAAACACAAA
AAGCATAAATCAATTTACTTTACAATATGAATAAAGAACTTATTCAGAAG
GTTCATAGTAGCAGGGTATGTGTCAGTATGTTATGCATTTAACATTAACT
GTTCCTGCTACAAGAGCATGGTCTATATCAGTAATCTATGGACAACTGCA
GAACCTTCCTTGTACCACCAGAGAGCAGTAAATAGCCATTATTCAAGATT
TAAAAAATTGCCCTGTAATTGCAATTGGTTCTTTTCCTCTATACAGCATC
CTGGCAAATACTCAGTAAGTCTTGGCTGTCCAAATTGTTAGATGAAGTTA
CTGAAAGAAGGGAACCCTTTTGCAGATTAAGTCCTGTAAGCTTATTGGAG
TTGGCTAAAGGGGACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h16.g1 MSMg01no279_h16.g1 CHROMAT_FILE:
MSMg01no279_h16.g1 PHD_FILE: MSMg01no279_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:04 2005
         (292 letters)



>mm_chr4_64153669_64154360
          Length = 692

 Score =  520 bits (269), Expect = e-152
 Identities = 285/291 (97%), Gaps = 3/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagtaacaaaatgcttatgtcttcttgtatattgagtgcaagtatgaaaaccatgaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 646 attgagtaacaaaatgcttatgtcttcctgtatattgagtgcaagtatgaaaaccatgaa 587

                                                                       
Query: 61  gcaatatagagattcccagtgctaaatcagcactgttcctatgcctgtgagccacaaata 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcaatatagagattctcagtgctaaatcagcactgttcctatgcctgtgagccacaaata 527

                                                                       
Query: 121 gaaagagaattaacatatttatttttatttttttatatggaatcttgttaggtttttttt 180
           |||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 526 gaa--agaattaacatatttatttata-ttttttatatggaatcttgttaggtttttttt 470

                                                                       
Query: 181 tctgcttaaatcataactttgagtttcttggtgttatttgattgacattctttgcaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tctgcttaaatcataactttgagtttcttggtgttatttgattgacattctttgcaaact 410

                                                              
Query: 241 gttcccatatttacattaatacatactctaatttctaattctaacaagtga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttcccatatttacattaatacatactctaatttctaattctaacaagtga 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)