Query= MSMg01no279_h17.b1 MSMg01no279_h17.b1 CHROMAT_FILE:
MSMg01no279_h17.b1 PHD_FILE: MSMg01no279_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:05 2005
(653 letters)
>mm_chr4_125187432_125188484
Length = 1053
Score = 1106 bits (572), Expect = 0.0
Identities = 630/654 (96%), Gaps = 12/654 (1%)
Strand = Plus / Minus
Query: 5 gaattccttgaatgcccccatacacagtgagtgtgctgctttgttttaataataataaaa 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 934 gaattccttgaatgaccccatacacagtgagtgtgctgctttgttttaataataat--aa 877
Query: 65 ----aaaaagatcttttttttaaaaaagcctaaaacaaaaatagcctgaagcaagcaagg 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttttaaaaagatcttttttt----aaagcctaaaacaaaaatagcctgaagcaagcaagg 821
Query: 121 agggccacaagacctccagcaagaccaatgggacaggagagactttccgtagccatgcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 820 agggccacaagacctccagcaagaccaatgggacaggagagactttccgt-gccatgcct 762
Query: 181 gctcctaaaatggctgggggtgggttccagacaggcttgagactgggggtgagatgtgct 240
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 761 gctcctaaaatggctgggggtgggctccagacaggcttgggactgggggtgagatgtgct 702
Query: 241 tccccgaaggcttcccagagcaggcggggcttctgctagatttgcagtgtgaggaagaag 300
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 701 tccctgaaggcttcccagagcaggcggggcttctgctaggtttgcagtgtgaggaagaag 642
Query: 301 ggatgaaatggaaggctggagagagatggcactgaaagcgagatgctcaagatgcatagc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 641 ggatgaaatggaaggctggagagagatggcactgaaagagagatgctcaagattcacagc 582
Query: 361 atcagagctggaaccgctgcaccccagccggggtctcagcaacacaccctgtggctgaga 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atcagagctggaaccgatgcaccccagccggggtctcagcaacacaccctgtggctgaga 522
Query: 421 ggtcggggtggagcaactgcaattcgtaatccagaaggaccagtaaggatccggaagggc 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 521 ggtcggggtggagcaactgcaattcctaatccagaaggaccagtaaggatccggaagggc 462
Query: 481 agcgtctgccctcccagggtcaggccctgcaactgggacagatgccagggtgaagtgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agcgtctgccctcccagggtcaggccctgcaactgggacagatgccagggtgaagtgagt 402
Query: 541 gcagggagggggaggactagacgctgagggggccaggctagaccaggagaaagagatggg 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccagggagggggaggactagatgctgagggggccaggctagaccaggagaaagagatggg 342
Query: 601 caggaggaacagaagcaggaaccactgtgggcattg-aaaagccctctggccaa 653
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 341 caggaggaacagaagcaggaaccactgtgggcattgaaaaagccctctggccaa 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_h17.g1 MSMg01no279_h17.g1 CHROMAT_FILE:
MSMg01no279_h17.g1 PHD_FILE: MSMg01no279_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:05 2005
(290 letters)
>mm_chr4_125084819_125085508
Length = 690
Score = 482 bits (249), Expect = e-140
Identities = 279/289 (96%)
Strand = Plus / Plus
Query: 1 cacattatcacttctgtggatcctattggtcccaacagatggagggccccgttagaggga 60
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 cacattatcacttctgtggatcctattggtcccaacagatggagggtcaggttagaggga 260
Query: 61 aggaaaatagattccacctagtgcaggaggagtgctaaggaactggctgccatttttaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aggaaaatagattccacctagtgcaggaggagtgctaaggaactggctgccatctttaac 320
Query: 121 ctaccaatcctctctggtttccatctgcctgtaggatagattccaacccctccaccttag 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ctaccaatcctctctggtttccatctgcctataggatagattccaacccctccaccttag 380
Query: 181 tggcctctggggacaggatgcctgacatctgtctcttgcagctctatatcttgtctgctg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tggcctctggggacaggatgcctgacatctgcctcttgcagctctatatcttgtctgctg 440
Query: 241 tatctctttccacatcccctccaaaccctccatcatgtcgaacccttct 289
|||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctcagcccacagcccctccaaaccctccatcatgtcgaacccttct 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
