BAC Information

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BAC

Clone NameMSMg01-279P20
Chromosome4 (Build37)
Map Location 13,379,385 - 13,379,700
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279P20.T7 (MSMg01no279_p20.b1)MSMg01-279P20.TJ (MSMg01no279_p20.g1)
ACCAG417197AG417198
length751766
length of high quality
(start - end)
320 (39 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_p20.b1 PHD_FILE: MSMg01no279_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:44 2005CHROMAT_FILE: MSMg01no279_p20.g1 PHD_FILE: MSMg01no279_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AATCAGAACTCAATTCATTAAGCAATGAGCATTGCACTCAAGTAGTCCTA
GGCAAAACTTGATGCTATTTGACTAATTAGATAAATTTCTGTGCAAGGGG
TGATCAGTTACAGCCAGTGCCAGGATAATTCATTAGATCCCCTTCCTAAT
TTGGCATTTTCATGGGATCCTTTCTGGGTCGCATCGCCATAGGTATGGGC
TTCAACATTATGACAACGACTCTTGCCTTGGACTATTTTTACCTTTGGTT
TTTGTGTAATGAGTTTAGCCTGAAGCAGACTGCCAGCATTGTTGACATTT
CATTGAGTTTCCAGTTCTCAAGAGAGGAGAAATTTTAGCTAATTAAATAG
TGTTAGAATGTCTTAGAAACTACAAAAGCAGCATGAACCCATGCTGCAAT
CACACCGTATTTAAGACCACCGAGTCTTTTCTTTTTAGAAAAACTAAAGT
CTGCAAAACAAAACTTTGGAAATGATAGATAGGCTCAAAATTCAGTCACC
ACTATAAATGGAAAGATGGGAGAAAAATGGAAAAAGAATTCTCATGATAA
ACATCGTATTTATGGCAAAGACAAGAAGTAGGTGTTTTGTGTGTGGCACA
ACATTAGTGATATACTTGTGTGTGTGTGTGTGTGTGTGATGTGTGTGTAC
TTAAATTAACACTACTACTATATATTAATCTTTCTTTCTTTTCTTTACCC
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCTGCTTGCCTATGTTAAG
CACAGACAATAAGTTAGCTGGGTGGGATCCTACCCAAAAAATTACCATTT
CTATAATGATTGGCCCTGGATCTAAACTCCCTCAGTCCCAGGTTGACCTT
GAATTTAGGAATTTGCCTGCCTTGTAAGTACAAACAAAAACCTTAGCTGG
GTGGGATCTTGCCCTGGAGTCACCACTCCCTAAATCTCTTTTTCTCCTTC
CTTAGTATCTTTCTGACAAGCTGGCTCATAGTGCAGCACATTTGTGAAGC
TCCTTATACAAATCGTATTACATCCTGACACCCTGCATAGTTGAGAAATT
ATATATTTTTGAACTCATGTTTTCAGAGCTTTTCCCCACAGTTTTAAGGC
TAGTCCTGAAGTTAGCATTTACCATTTTGCTGAGACATTGACTCCTAGAT
TCCTGGTATTTCTAATTATCATGGAATAATAAATGTTGGCAGGGAAAACA
TTCCTGATAACCTTGGCAGGGAGAATATTTTGTGAAGGGGGAACATGAAA
TATATATATATATATATATATATATATATATATATATATAATATATATGT
GNNATTTCCACTTNNTTTCATAATCCACCCCCTCACTGTTTTCTAGTTTA
TATTTATACTTAACTACAAGCTCACTCTCTATTTTATACTTAACCCTCTT
ATAATCTTATATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_p20.b1 MSMg01no279_p20.b1 CHROMAT_FILE:
MSMg01no279_p20.b1 PHD_FILE: MSMg01no279_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:44 2005
         (320 letters)



>mm_chr4_13379181_13379900
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatcagaactcaattcattaagcaatgagcattgcactcaagtagtcctagg 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattccaaatcagaactcaattcattaagcaatgagcattgcacccaagtagtcctagg 264

                                                                       
Query: 65  caaaacttgatgctatttgactaattagataaatttctgtgcaaggggtgatcagttaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaacttgatgctatttgactaattagataaatttctgtgcaaggggtgatcagttaca 324

                                                                       
Query: 125 gccagtgccaggataattcattagatccccttcctaatttggcattttcatgggatcctt 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccagtgccgggataattcattagatccccttcctaatttggcattttcatgggatcctt 384

                                                                       
Query: 185 tctgggtcgcatcgccataggtatgggcttcaacattatgacaacgactcttgccttgga 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgggtcgcatcggcataggtatgggcttcaacattatgacaacgactcttgccttgga 444

                                                                       
Query: 245 ctatttttacctttggtttttgtgtaatgagtttagcctgaagcagactgccagcattgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatttttacctttggtttttgtgtaatgagtttagcctgaagcagactgccagcattgt 504

                           
Query: 305 tgacatttcattgagt 320
           ||||||||||||||||
Sbjct: 505 tgacatttcattgagt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)