BAC Information

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BAC

Clone NameMSMg01-280A01
Chromosome4 (Build37)
Map Location 107,409,852 - 107,410,125
singlet/doubletsinglet
Overlap genenone
Upstream geneBC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889
Downstream geneLOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280A01.T7 (MSMg01no280_a01.b1)MSMg01-280A01.TJ (MSMg01no280_a01.g1)
ACCAG417206AG417207
length749718
length of high quality
(start - end)
358 (73 - 430)274 (127 - 400)
definitionCHROMAT_FILE: MSMg01no280_a01.b1 PHD_FILE: MSMg01no280_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:45 2005CHROMAT_FILE: MSMg01no280_a01.g1 PHD_FILE: MSMg01no280_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAGATATTCCTCAGATACATCCCCAATGTCCTGACTTGACCTGC
TGGAGGAAAGAGTGAACCATACTGGGGGGAGCAGGCAGGGTCCTCCTGGA
CCCCAACCCTAGTTCTCTTCCAGCCATGCTGGCCTCTTGGCTGCTTCTCA
AACATGCTGAGCTCATTAGAACCACATGCTTTCTGCATAGCTATTCCTTC
TGCCCAAATGCCCCTACCCCAGTCTGACCTTTATGCATTCAAACCCCAGC
TCCTATGTTCCCTCCTCCAGGAGGCCTTCCCTGACCTGTAGCCCACTCTC
TGGTATCTGTATGAGTTCCTACTTCGCAGCCATTAAGCTCCGGGGAAGTT
CAAGACTTTTTAAGATTTTTGTTTCTTGCTGTGCTTTCAGTGTTAGCACC
AGTTCCCAGTCTATTGTAATGTGACCCACAGGTCACAACGAATGTCACCA
AATTAGGGGAGAGTGGTCCTTAGGTGCTGATGCAAGGTCCTGCCCAGGCG
CCCAGGTTAGGGCACCATAACGCTTATTTTCTTTTGCCTTGTGCATAGGC
ACTTTTTTAGTGCCCAGATTAGCCGTGAGTCCGCGTTATTCCTTGGATGC
CCCAGTTACCCCTCCTCATCGCTATTATTGCGTGAGTCACTTCCCCCATT
CCCGGGTTCCATTTATTTTTGGTCTTCCATCCCGCCTGTCTCTCCCGTG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGGCGCTGGGCAGGAAGGGGAAC
CGTCAGCCATTATGGGACTTTCTCCTTCTAGCTGAGCCCTGGCTAAGGAG
AGTCAGGGACTCAAAGTTGGGAACTGTGTGACCCAGTGCCAGCAATCCTT
GGGGCGTCTCAGACTTTCCTCCCTGATACACGCTGGGCTTTTGAAGTAGA
TTTCTGGAGCAGCTCTCTGACCCCAAATCCTGAGGACCACTGCAAGCCAG
TAGCACTCCTCAGCTACTTCTCTGACCCTTACTCCCCTGCTTCATCCCTC
CCACAATGAACAGATTCCCATAGCCTCTACTTTTCCAGAAGGCTGCAGAT
ACATCCACTCTTACCCCTCTTTGAAGCTGTGAAGACCTTCAGCCCTTGCT
TGTCATTAGTGTATTCAGGACCAGCATCTTATACACGTATGTACCGTGTC
ACACGTATGTACCGCGTTCCGGACTGCTCCTCCGCTCTGCCTCTGCTCAT
TACCAGCTTGTGGAGACCATTTTTGTAAGGTGACGCATGTGCTTCACGTT
TCTATTAATATTAGCCAAGTTTTCACTTTGATTTCTTCTGATATCGCCCT
CAACCTCCTAGTCTGAAATTATCCTTCTCAGCTCAGTCTTTTTGAGTTAT
TTGGGCTCCATATGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_a01.g1 MSMg01no280_a01.g1 CHROMAT_FILE:
MSMg01no280_a01.g1 PHD_FILE: MSMg01no280_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:45 2005
         (274 letters)



>mm_chr4_107409652_107410326
          Length = 675

 Score =  484 bits (250), Expect = e-141
 Identities = 268/274 (97%), Gaps = 1/274 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagctgagccctggctaaggagagtcagggactcaaagttgggaactgtgtgacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctagctgagccctggctaaggagagtcagggactcaaagttgggaactgtgtgacccag 415

                                                                       
Query: 61  tgccagcaatccttggggcgtctcagactttcctccctgatacacgctgggcttttgaag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgccagcaatccctggggcgtctcagactttcctccctgatacacgctgggcttttgaag 355

                                                                       
Query: 121 tagatttctggagcagctctctga-ccccaaatcctgaggaccactgcaagccagtagca 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 354 tagatttctggagcagctctctgaaccccaaatcctgaggaccactgcaagccagtagca 295

                                                                       
Query: 180 ctcctcagctacttctctgacccttactcccctgcttcatccctcccacaatgaacagat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 294 ctcctcagctacttctctgacccttactcccctgcttcatccctcccacaatgaacacag 235

                                             
Query: 240 tcccatagcctctacttttccagaaggctgcaga 273
            |||||||| ||||||||||||||||||||||||
Sbjct: 234 ccccatagcttctacttttccagaaggctgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)