Query= MSMg01no280_o20.b1 MSMg01no280_o20.b1 CHROMAT_FILE:
MSMg01no280_o20.b1 PHD_FILE: MSMg01no280_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:53 2005
(721 letters)
>mm_chr4_84632764_84633885
Length = 1122
Score = 816 bits (422), Expect = 0.0
Identities = 467/490 (95%), Gaps = 18/490 (3%)
Strand = Plus / Minus
Query: 5 gaattcaaagtaact-cttctgataaaagcccatcacatagatatttttatccagctttc 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcaaagtaactcctt-tgataaaagcccatcacatagatatttttatccagctttc 420
Query: 64 tatggg-aaaaaaatgtagacccacaagtctttctttatcagctattgaccagaacagta 122
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tatgggaaaaaaaaagtagatccacaagtctttctttatcagctattgaccagaacagta 360
Query: 123 aaagcatatggcacaagttcattaatgaacaacacagagaactgtaatttaatgaaacca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaagcatatggcacaagttcattaatgaacaacacagagaactgtaatttaatgaaacca 300
Query: 183 cttgagctataaaaatcagatttagttaattccctccttcccatttttttcacgtttacg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cttgagctataaaaatcagatttagttaattccctccttcccatttttttcacgtttacg 240
Query: 243 ctaaatctaggagtctacctaaggctacctgagat----gatagatagatagatagatag 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 239 ctaaatctaggagtctacctaaggctacctgagatgatagatagatagatagatagatag 180
Query: 299 atagatagatagatagatagatagatagatataccaatacagatatatacagaaagagat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atagatagatagatagatagatagatagatataccaatacagatatatacagaaagagat 120
Query: 359 atagagatatagatataacatgaatatatataatatatacacatatatgaacacagacaa 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 119 atagagatatagatataacatg---------aatatatacacatatatgaacacagacaa 69
Query: 419 acacccacacatatatgcatgtgtatatatatatacatatatatgtatatatacacatat 478
|||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 68 acacccacacatatataca--tgtatatatatatatatatacatgtatatatacacatat 11
Query: 479 ttaaggtaag 488
||||||||||
Sbjct: 10 ttaaggtaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1122
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1112
Effective search space: 790632
Effective search space used: 790632
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_o20.g1 MSMg01no280_o20.g1 CHROMAT_FILE:
MSMg01no280_o20.g1 PHD_FILE: MSMg01no280_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:53 2005
(681 letters)
>mm_chr4_84475012_84476092
Length = 1081
Score = 1232 bits (637), Expect = 0.0
Identities = 671/683 (98%), Gaps = 3/683 (0%)
Strand = Plus / Plus
Query: 1 ttagcgagacctagaaccc--taattaaggggtgtgaaacatgtgagacagaggtaagaa 58
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttagcgagacctagaacccactgattaaggggtgtgaaacatgtgagacagaggtaagaa 259
Query: 59 aggctgagtctttgatctgtgggtcatctgctagttaattcatgttcaaaacatattaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggctgagtctttgatctgtgggtcatctgctagttaattcatgttcaaaacatattaaa 319
Query: 119 tattcaattttttttataaccactggatgggaagagacatcagctctgacactgaattgt 178
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattcaattttttt-ataaccactggatgggaagagacatcagctctgacactgaattgt 378
Query: 179 tcacattctgtactcagatagcttatgtggtcttgtagatttccttaggaacgaatgtac 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 tcacattctgtactcagatagcttatctggtcttgtagatttccttaggaacgaatgtac 438
Query: 239 tatgtatatggggttcaggagattggatgatggttttggagaactgtataattcttggag 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 tatgtatatggggttcaggagattggatgatggctttggagaactgtataattcttggag 498
Query: 299 ggcagtttctttcaaaaataaataacaaatttttaaaataaaatttctttctttaaaaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggcagtttctttcaaaaataaataacaaatttttaaaataaaatttctttctttaaaaaa 558
Query: 359 ataacatttattttcatcttcaggataaggatgttttgtctgcatgtaggtctgtgcact 418
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 559 ataacatttattttcatcttcaagataaggatgttttgtctgcatataggtctatgcact 618
Query: 419 tgcctgtgttgccaacagaagccaggagaaggttctaggaaagaagtccttgaggaagac 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgcctgtgttgtcaacagaagccaggagaaggttctaggaaagaagtccttgaggaagac 678
Query: 479 agtttcttttgatagctaattttattgtacatgtatgtgcctatggttgatttaggcaaa 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtttcttttgattgctaattttattgtacatgtatgtgcctatggttgatttaggcaaa 738
Query: 539 tttaaacaaaactctgctcacagcctttgtgtctgaattagaacctagcattggtgactt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttaaacaaaactctgctcacagcctttgtgtctgaattagaacctagcattggtgactt 798
Query: 599 cgttgtgattagcatgattctaatgctacaagtgcagccactgattacatctgcatgctg 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 799 cgttgtgattagcatgattctaatgctgcaagtgcagccactgattacatctgcatgctg 858
Query: 659 cttctattaacttcctgtttgtg 681
|||||||||||||||||||||||
Sbjct: 859 cttctattaacttcctgtttgtg 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
