BAC Information

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BAC

Clone NameMSMg01-280O21
Chromosome4 (Build37)
Map Location 115,963,009 - 115,963,553
singlet/doubletsinglet
Overlap genePik3r3
Upstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280O21.T7 (MSMg01no280_o21.b1)MSMg01-280O21.TJ (MSMg01no280_o21.g1)
ACCAG417894AG417895
length758936
length of high quality
(start - end)		555 (46 - 600)48 (114 - 161)
definitionCHROMAT_FILE: MSMg01no280_o21.b1 PHD_FILE: MSMg01no280_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:53 2005CHROMAT_FILE: MSMg01no280_o21.g1 PHD_FILE: MSMg01no280_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGAGTATCCACCTGCCTCTGCCTCCCTGGTGCTGGGATTAAAG
GTGTGAGCTACTACACCTGGCCTCATTTTATTTTGATTTAGAGAGAATAA
AGTTCTGTCCACAAACAATGGTATACTCTTCTCTTTTTTGGGAGGCAGCT
ATATTCATCACTGTCCACCATGTACCTCTTACATAAAAAGTATTTAATCT
CATTTATTATGAATCTTTCCCATCATGTGGATACCCAAATGTGAACATGT
GCTTCTGTGTTGGGTGTACACGCACACACACACATGCACACACACACACA
GACACACACGCGCGCACACACACATACAGACACACATGCGCAACACGTGC
ACACTTGCACATGCATGCGCGCACACACGCATTGAATCACATAAGCATGT
CTGAGCAACTGTGGCACTGCACTTAGTGCATGTTTTGCTTTTTGTTTTTT
TTTGTTTTTTTTTTTACATGGTTTCTCTGTGTAACAGAGCCCTGGCTGTC
CTGTAACTCACTCTGTGGACCAGACTGGCATTGAATTTACAGAGATCTGC
CTGCCTCTGCCTTTGGGTTCAAAGATGTGCAACACCTGCCAGCCAGTCAG
ATCTACTTAGTGAGACCCTGTCTCCATGAAACATAAACAAACACCACAAA
AGCCCTCGTTTATTAAACCATGGAGCACCGGGTCTTCTGTCCCTGAATCC
TCCCAACT

CTTTCTTTACCTTTTCTTTCCTTTCCTTTCTTACCCTTTCTTTTTCTATG
AAGTGTGTAGGCTGGCGGCTGCTGTTCGACAAATTTAGGTGAACTATAGA
ATTTACCCGAGCAATTCTTTGCTCATTTTAAAAACTGAGTACTCTTACTT
TATTTATTTTACCCCCACCTTATTCTTGTTATAGTTGGTTCTCTGAGTTC
ATTAAGTTCTGAATTCTACCAATTTAATTTAGGAATTTTATATCTTTTGA
AATTCCTCTATAACATGTTTGAGTTTCTTTGGTCTATCATGTTTTTATAT
AACGGTCTCATAACTTTTTTTTTTATTTTATTAAAGTTCTGATTTTTATC
ACAGGCTCTGTCACCTATATTATTTTTTTATCTACTCTTAATTTGATTTA
TTCCTATACTACATTATATTTTTTTTTGTTTCCCCCCCCCCCCTCTCGCC
CTCCCCCTTATGTTTATGTCCCCGGTTTCGTTGTTCGTTTTTTCTTCATA
CAACAAAACAATTGCCCTTTTTCGGGATGGCGGTTCTCTCCCCCCCTTTA
CCCCCCCTGTCCAATTTATTTTTTTTCCTCTCCCGCTTTTTTTTTTTTTT
CCATTCTTTCTCCCTCCCCCTCATCCTTTCCCCGTTTTTCCGCCCATTTT
TCCTCCTTATTTTCCCTTTTTTCCCCCCCTCCTTTATTCTTTTTTTTTTC
CCCCCTCTTTTTCTCCCCCTCTTTTTTTTGGTTTCTTTTTATCCCCCTTA
TTTTTTTTCCTCTTTTTGTTCCCTTCACATTTTCTCGCCCCTTTCTATCT
AATCTACATCTCACTCTATTTTTGTTCTTTAACCTCTCTTTTCTTGCACC
ACTCTATCTCTTTCTTATCTATTTTGTTCCATCCTCACTTTTCTCCTTAT
ATCCTCTTCTTTTTTCGGGTCAATATTCTCTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_o21.b1 MSMg01no280_o21.b1 CHROMAT_FILE:
MSMg01no280_o21.b1 PHD_FILE: MSMg01no280_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:53 2005
         (555 letters)



>mm_chr4_115962805_115963759
          Length = 955

 Score =  948 bits (490), Expect = 0.0
 Identities = 535/558 (95%), Gaps = 19/558 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacagagtatccacctgcctctgcctccctggtgctgggattaaaggtgtgagc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcacagag-atccacctgcctctgcctccctggtgctgggattaaaggtgtgagc 263

                                                                       
Query: 64  tactacacctggcctcattttattttgatttagagagaataaagttctgtccacaaacaa 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 tactacacctggcctcattttatttttatttagagagaataaagttctgtccacaaacaa 323

                                                                       
Query: 124 tggtatactcttctcttttttgggaggcagctatattcatcactgtccaccatgtacctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggtatactcttctcttttttgggaggcagctatattcatcactgtccaccatgtacctc 383

                                                                       
Query: 184 ttacataaaaagtatttaatctcatttattatgaatctttcccatcatgtggatacccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacataaaaagtatttaatctcatttattatgaatctttcccatcatgtggatacccaa 443

                                                                       
Query: 244 atgtgaacatgtgcttctgtgttgggtgtacacgcacacacacacatgcacaca--caca 301
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||
Sbjct: 444 atgtgaacatgtgcttctgtgttgggtgtacacgcacacacacaca--cacacatgcaca 501

                                                                       
Query: 302 ca----cagacacacacgcgcgcacacacacatacagacacacatgcgcaacacgtgcac 357
           ||    |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 502 catacacagacacacacgcgc--acacacacatacagacacacatgcgcaacacgtgcac 559

                                                                       
Query: 358 acttgcacatgcatgcgcgcacacacgcattgaatcacataagcatgtctgagcaactgt 417
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 acttgcacatgcatgcgtgcacacacacattgaatcacataagcatgtctgagcaactgt 619

                                                                       
Query: 418 ggcactgcacttagtgcatgttttgctttttgtttttttttgtttttttttttacatggt 477
           ||||||||||||||||||||||||||||||| |||||||||       ||||||||||||
Sbjct: 620 ggcactgcacttagtgcatgttttgcttttt-ttttttttt-------tttttacatggt 671

                                                                       
Query: 478 ttctctgtgtaacagagccctggctgtcctgtaactcactctgtggaccagactggcatt 537
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 672 ttctctgtgtaacagagccctggctgtcctggaactcactctgtggaccagactggcatt 731

                             
Query: 538 gaatttacagagatctgc 555
           ||||||||||||||||||
Sbjct: 732 gaatttacagagatctgc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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