Query= MSMg01no288_a17.b1 MSMg01no288_a17.b1 CHROMAT_FILE:
MSMg01no288_a17.b1 PHD_FILE: MSMg01no288_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:02 2005
(616 letters)
>mm_chr4_57179399_57180414
Length = 1016
Score = 1046 bits (541), Expect = 0.0
Identities = 594/612 (97%)
Strand = Plus / Minus
Query: 5 gaattctcagatctgaacgccagaccttgttgtggaacttgctgtacaagttctgtgcag 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaattctcagatctgaaggccagaccttgttgtggaacttgctgtacaagttctgtgcag 757
Query: 65 agggactctagtggccatttgcccttatccaaagcacagggtcactagcaaacaagtcgc 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agggactctagtggctatttgcccttatccaaagcacagggtcactagcaaacaagtcgc 697
Query: 125 tgacaagtagggacccagacaatactgaggaggaggtgagggtaaagatctgagttcctg 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 696 tgacaagtagggacccagacaatactgaggaggaggtgagggtaaagatccgagttcctg 637
Query: 185 aggctggagttcccctcccactcattttgagatgatagagtgtctgccatagcccatggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aggctggagttcccctcccactcattttgagatgatagagtgtctgccatagcccatggt 577
Query: 245 cacttgaagccacactgattgggtatgtgtagaaaagaagtaagggaaagccctcagcaa 304
||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 cacttgaagccgcagtgactgggtatgtgtagaaaagaagtaaggggaagccctcagcaa 517
Query: 305 gtaagctaggatatggtcttactggtgtgccctgatctatcccccagggatgaagatagc 364
|||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 516 gtaagctatgatatgggcttactggtgtgtcatgatctatcccccagggatgaagatggc 457
Query: 365 atagtctgccacccctanactaaacaccgccccccaccatccatcttcccaggcaggtac 424
|||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atagtctgtgacccttagactaaacaccgccccccaccatccatcttcccaggcaggtac 397
Query: 425 cttcctgggcccagcatattttgtttgctcatttgtgttgcagttacactaaaagtgctt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttcctgggcccagcatattttgtttgctcatttgtgttgcagttacactaaaagtgctt 337
Query: 485 ccattaaagctagaatcttagggagagcctgggttgtatgccagattagttagatgacca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 ccattaaagctagaatcttagggagagcctgggttgtatgccagattagttaggtgacca 277
Query: 545 agaaaagcagtggggttttcatagctggcaaaatctccggaactggaattcggatatcag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agaaaagcagtggggttttcatagctggcaaaatctccggaactggaattcggatatcag 217
Query: 605 agtttcttagag 616
||| ||||||||
Sbjct: 216 agtctcttagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_a17.g1 MSMg01no288_a17.g1 CHROMAT_FILE:
MSMg01no288_a17.g1 PHD_FILE: MSMg01no288_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:02 2005
(290 letters)
>mm_chr4_57016512_57017205
Length = 694
Score = 509 bits (263), Expect = e-148
Identities = 284/293 (96%), Gaps = 4/293 (1%)
Strand = Plus / Plus
Query: 1 attaagaacattcagagtcacatagggaccagatcaactgccagttcaacttcgtacaga 60
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 attaagaacattcagggtcacatagggaccagatcaactgcccgttcaacttcgtacaga 260
Query: 61 gctgttgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaaggcttccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgttgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaaggcttccg 320
Query: 121 tgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccgaaagcc----cga 176
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 321 tgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccaaaagcctgagcga 380
Query: 177 ggccttggctttggctcctgtgactaatcagctcggatatcaccatcttccctctcaact 236
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccttggctctggctcctgtgactaatcagctcggatatcaccatcttccctctcaact 440
Query: 237 attccctactccccagcctagaggcactctctaacagctggtcctcgttttca 289
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 attccctactccccagcctagaggcactctctaacagctggtcctccttttca 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 694
Length adjustment: 9
Effective length of query: 281
Effective length of database: 685
Effective search space: 192485
Effective search space used: 192485
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
