Query= MSMg01no288_d09.b1 MSMg01no288_d09.b1 CHROMAT_FILE:
MSMg01no288_d09.b1 PHD_FILE: MSMg01no288_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:14 2005
(445 letters)
>mm_chr4_53931436_53932280
Length = 845
Score = 814 bits (421), Expect = 0.0
Identities = 439/445 (98%)
Strand = Plus / Plus
Query: 1 agtgttccccattttactgatgaagaacacaggctgacatgggatcactcgtgcagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttccccattttactgatgaagaacacaggctgacatgggatcactcgtgcagttca 260
Query: 61 tggactgggagacggtggtactgggagtgagctctgtgtgactgtggagttctgccctca 120
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 261 tggactgggagacggtggtactgggagtgagctctgtgtgactgtggggctctgccctca 320
Query: 121 gagcgatgatgatgattaggggctgtgtatagaggttcatgcttgcagtcccagcactca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcgatgatgatgattaggggctgtgtatagaggttcatgcttgcagtcccagcactca 380
Query: 181 ggagacagaggcacaaggtgcataacaagttcaaggtgaaccttctgtgcaaagagtagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagacagaggcacaaggtgcataacaagttcaaggtgaaccttctgtgcaaagagtagc 440
Query: 241 cagtctggtaaatttagacagttccaggtaagatagagttatccagtgaggccccgcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 441 cagtctggtaaatttagacagttccaggtaagatagagttatccagtgaggtcctgtctc 500
Query: 301 agaacaccaattaaagcacaaacacacacagaggcccatatagatatacacagacacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacaccaattaaagcacaaacacacacagaggcccatatagatatacacagacacaca 560
Query: 361 tagcacacataggcacatgcagatacatgcaagcacacacacatacacacacagagcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcacacataggcacatgcagatacatgcaagcacacacacatacacacacagagcaca 620
Query: 421 catacacactaacacacagacacaa 445
||||||||| |||||||||||||||
Sbjct: 621 catacacacaaacacacagacacaa 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_d09.g1 MSMg01no288_d09.g1 CHROMAT_FILE:
MSMg01no288_d09.g1 PHD_FILE: MSMg01no288_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:15 2005
(546 letters)
>mm_chr4_54097018_54097963
Length = 946
Score = 973 bits (503), Expect = 0.0
Identities = 536/547 (97%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 1 ccagaaggtaacaagtaagtagattttgttaccattttcaaataaatatttgatatctac 60
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 746 ccagaaggtaacaagtaagaagattttgttaccatttgcaaataaatatttgatatctac 687
Query: 61 caccgcatgaaaatcctggagggccagaaattgtgatcccagttgaacaattacggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caccgcatgaaaatcctggagggccagaaattgtgatcccagttgaacaattacggaaat 627
Query: 121 tcagaaagaataggtaatttcccaaatgtcggtttcatgtaaagcgatctgacctcagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcagaaagaataggtaatttcccaaatgtcggtttcatgtaaagcgatctgacctcagcg 567
Query: 181 ctgatgacccaattgatttggtccatgtgatcatctagacagatgtcacctgcccccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgatgacccaattgatttggtccatgtgatcatctagacagatgtcacctgcccccatc 507
Query: 241 atttttctcctttgaagccaaactccccctacagaagggaagatggccacaactctccca 300
| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 506 acggttctcctttgaagccaaactccccctgcagaaaggaagatgaccacaactctccca 447
Query: 301 agaaaacttcaaatcagcattagggctccctgagtatgaacaggaactgtggcttccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaaaacttcaaatcagcattagggctccctgagtatgaacaggaactgtggcttccatc 387
Query: 361 ttacccacagagggtggcacagaggattagccatcactcctaagattactttacttatgg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttacccacagagggtagcacagaggattagccatcactcctaagattactttacttatgg 327
Query: 421 cggattctgtcccttttatctgcagacccaatctaggtcttctggtagaagaaacttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cggattctgtcccttttatctgcagacccaatctaggtcttctggtagaagaaacttatt 267
Query: 481 tctgtgctgtgaactgcctagggcaatggc-atacagaagattcctaggaccaccagtgg 539
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 266 tctgtgctgtgaactgcctagggcaatggcaat-cagaagattcctaggaccaccagtgg 208
Query: 540 tttccag 546
|||||||
Sbjct: 207 tttccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
