BAC Information

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BAC

Clone NameMSMg01-288D16
Chromosome4 (Build37)
Map Location 35,259,007 - 35,259,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
Downstream geneLOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288D16.T7 (MSMg01no288_d16.b1)MSMg01-288D16.TJ (MSMg01no288_d16.g1)
ACCAG418112AG418113
length750754
length of high quality
(start - end)
657 (48 - 704)377 (376 - 752)
definitionCHROMAT_FILE: MSMg01no288_d16.b1 PHD_FILE: MSMg01no288_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:16 2005CHROMAT_FILE: MSMg01no288_d16.g1 PHD_FILE: MSMg01no288_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTTTAATAGCTGAGTAGTAATCCATTGTGTAAATGTAC
CACATTTTCTGTATCCATTCTTCTGTTGAGGGACATCTTCTGGATACTTT
TTTCCCTGTTTTTTTTTTTTTTTTTTTTTAAGTTAGTTTGAAAAAGGGTT
TGCTTATCTTGTTGATTTTCTGAAAGATCCAATTCTTTGTATTGTTCTCT
TCATTTCTATTTTATTGATTTCAGACCTCGGTTTGATTATTTCTTGTTGT
TTACTCCTCTTGGGTGTATTTGCTTCTGTTTTGTTCTACAGCTGTCAGGT
GTGCTGTTAAGTTGCTAGTATGAGCTCTTTCCAGTTCCTTTATTAAATCA
CTGAGTGGTATGAACCTCACCTTTAGCACCACTTTCATTGTGTTTCACAA
GTTTAGGTATGATGTGTATTAATTTTTTTGAATTCTAGAAAGTATTTAAT
TTCTTTCATTCTATGTCTTGATCCAGTAGTCATTCAGTAGGGAGTTATTC
AGTTTCCATGAGTTTGTAGGCTTTTTCTTGTTTTTGTTGTGTAAAAATCC
AGCTTTAATCCATGGTGATCTGATAGAATACAGGGGCTTATTTCATGGNT
TGTTTGTTTGTTTTTCTAATCTGTTGAGACTGAGTATATAGTCAATTTGG
GAGATGTTCTCTTTAGTGCTGAGAAGAAGGTGTATTCCTTTGTGTTTCAG

TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGTGGAGCTGTTACCACCG
CTAGTTCATGTCTTCAACAGCCTCAGTTTTTCATCTTTTAGGAGATAGAA
ACTTTTTAAACTTAAACTCACCAAGAGCCATTCAGCATCCACAGTGAGGG
ATCAGACTGAATATCATTCTGTAGCAACACAAAATGTGACTGTAAAGTAA
AAGCATAAGGAATATTTAGCCGGTTGTGGCGGCGCACGCCGGTAGGATTT
GCTGAAGGAGGCAGAGGCAGGAGGATCACGAGTTGGAGGCCAGCCTGGGC
TACACATTTGCTGGGCAGTGTTGTTGCACGCCTTTAATCCCAGCACTTGG
GAGGCAGAGGCAGGCAGATTTCTGAGTTCCAGGCTAGCCTAGTCTACAAA
GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA
CCAAAATAGAAAAAAAAAAAAATTTAAGCTTGGTGTGTCTGTGTGTTTGA
TATGTATAATCATGTGACTGTGTGCACTTATGTGTACAGGTGTAAGACAG
GCAAGCCTGGGGAATACTTTAGAAGCATAGGAGGGACTCCACTTGGATTG
GTCTATGCACACATCTAACAGTGGACTCAGCAGCCTGGGATTACAGATGT
TTACCACTACCACACCTGGCTCTCATGAAGACCTGAGTTCAGGTTCTCAT
GCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_d16.g1 MSMg01no288_d16.g1 CHROMAT_FILE:
MSMg01no288_d16.g1 PHD_FILE: MSMg01no288_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:16 2005
         (377 letters)



>mm_chr4_35258738_35259514
          Length = 777

 Score =  636 bits (329), Expect = 0.0
 Identities = 364/377 (96%), Gaps = 3/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttccaggct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| 
Sbjct: 643 gcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggcc 584

                                                                       
Query: 61  agcctagtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcg 120
           ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 583 agcctgggctacagagtgagttccaggacagccagggctatacagagaaaccctgtctca 524

                                                                       
Query: 121 aaaaaccaaaatagaaaaaaaaaaaaatttaagcttggtgtgtctgtgtgtttgatatgt 180
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaaaaccaaaatag---aaaaaaaaaatttaagcttggtgtgtctgtgtgtttgatatgt 467

                                                                       
Query: 181 ataatcatgtgactgtgtgcacttatgtgtacaggtgtaagacaggcaagcctggggaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 466 gtaatcatgtgactgtgtgcacttatgtgtacaggtgtaagacaggcaagcctgaggaat 407

                                                                       
Query: 241 actttagaagcataggagggactccacttggattggtctatgcacacatctaacagtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 actttagaagcataggagggactccacttggattggtctatgcacacatctaacagtgga 347

                                                                       
Query: 301 ctcagcagcctgggattacagatgtttaccactaccacacctggctctcatgaagacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctcagcagcctgggattacagatgtttaccactaccacacctggctctcatgaagacctg 287

                            
Query: 361 agttcaggttctcatgc 377
           |||||||| ||||||||
Sbjct: 286 agttcaggctctcatgc 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)