Query= MSMg01no288_i01.b1 MSMg01no288_i01.b1 CHROMAT_FILE:
MSMg01no288_i01.b1 PHD_FILE: MSMg01no288_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:36 2005
(677 letters)
>mm_chr4_12657267_12658343
Length = 1077
Score = 1247 bits (645), Expect = 0.0
Identities = 666/673 (98%)
Strand = Plus / Minus
Query: 5 gaattctcatttcatgcctgaagatatgaaatacagctagtttgagtaatggaagataat 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattctcatttcatgggtgaagatatgaaatacagctagtttgagtaatggaagataat 818
Query: 65 aggttttggtaaggggaaacacaaagcaggagagagatacagggatgaccaatggcaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aggttttggtaaggggaaacacaaagcaggagagagatacagggatgaccaatggcaaag 758
Query: 125 gctttgcccaatgtatctaaaacagcctcagttacctggaccactcccaggtgatagcaa 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gctttgcccaatgtatgtaaaacagcctcagttacctggaccactcccaggtgatagcaa 698
Query: 185 tatgccatttcactcaagggtatcccattttactaaggacaatgtaggatctttatttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tatgccatttcactcaagggtatcccattttactaaggacaatgtaggatctttatttaa 638
Query: 245 agactgcattacaagattactttgtaattttaaagcttgaaaatgacaagcatacatgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agactgcattacaagattactttgtaattttaaagcttgaaaatgacaagcatacatgtt 578
Query: 305 acatttgtagactgtcatggttacaaggtatataaaaagatggtgtgggcggtgctgagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acatttgtagactgtcatggttacaaggtatataaaaagatggtgtgggcggtgctgagt 518
Query: 365 tcagggaggttcgccaaacagctgatggggaaatcagggaaaaggtaatagtacacagaa 424
||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 517 tcagggaggtttgtcaaacagctgaaggggaaatcagggaaaaggtaatagtacacagaa 458
Query: 425 taatgtgatgggagagctggagtggagaaacccgaggcctggtgtgtgtactagtctatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taatgtgatgggagagctggagtggagaaacccgaggcctggtgtgtgtactagtctatt 398
Query: 485 ccaggccccactagcaatcagcttcactgtggagcactctgagactgcttgctgccctaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccaggccccactagcaatcagcttcactgtggagcactctgagactgcttgctgccctaa 338
Query: 545 accaagatactagagaaagattctgatactagaaaaatgagagaagatcccaaagggtat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 accaagatactagagaaagattctgatactagaaaaatgagagaagatcccaaagggtat 278
Query: 605 cagttggaatggtgggctataggagagctcccctgttttatctcaacatactttgtctct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagttggaatggtgggctataggagagctcccctgttttatctcaacatactttgtctct 218
Query: 665 agggcacaaaccc 677
||||| |||||||
Sbjct: 217 agggcgcaaaccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_i01.g1 MSMg01no288_i01.g1 CHROMAT_FILE:
MSMg01no288_i01.g1 PHD_FILE: MSMg01no288_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:36 2005
(293 letters)
>mm_chr4_12498525_12499218
Length = 694
Score = 545 bits (282), Expect = e-160
Identities = 291/294 (98%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 1 ctaattttttatccttctcggaaatttgtatctagctagcctaaccccagcaactgagca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaattttttatccttctcgggaatttgtatctagctagcctaaccccagcaactgagca 260
Query: 61 ttcgcacatcctggagatggcagtctgtgtccaaggcagacatcctagagaagatggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgcacatcctggagatggcagtctgtgtccaaggcagacatcctagagaagatggggg 320
Query: 121 ggactcttttagggcttttgggctttacttctggcttggggacatccaaa-gcatagggg 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggactcttttagggcttttgggctttacttctggcttggggacatccaaaagcatagggg 380
Query: 180 aaggagagaaatgaccatttgggtggcagtcccttgttttctatgactttctttacactg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggagagaaatgaccatttgggtggcagtcccttgttttctatgactttctttacactg 440
Query: 240 ttcttggaactcagacagggggttttggctttctatccattaaatctcagccta 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttggaactcagacagggggttttggctttctatccattaaatctcagccta 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
