BAC Information

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BAC

Clone NameMSMg01-288L12
Chromosome4 (Build37)
Map Location 141,684,691 - 141,684,909
singlet/doubletsinglet
Overlap gene9030409G11Rik
Upstream geneD4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51
Downstream geneEG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288L12.T7 (MSMg01no288_l12.b1)MSMg01-288L12.TJ (MSMg01no288_l12.g1)
ACCAG418468AG418469
length755756
length of high quality
(start - end)
233 (45 - 277)220 (149 - 368)
definitionCHROMAT_FILE: MSMg01no288_l12.b1 PHD_FILE: MSMg01no288_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:52 2005CHROMAT_FILE: MSMg01no288_l12.g1 PHD_FILE: MSMg01no288_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCACTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCCCTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGAGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAAATTTTCCCCTGTGCCCATATCTTCAAGGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCTTTGTCTCTGCCCCCCTGTGAAGTTCCTTAAT
CCACTTATATTTGACCTTCACCCGAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACGTGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGATTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATATGTGTGTGGGTTCATTTCTGGGACTTCAATTCTATTCCATTGGC
CTAATTGTCTGTCTCTATACCTGCACCATGCAGATTTTATCGCAATTGCT
CTGGAGTACAGCTTTATGTCAGGCATGGTGATTCCACCGGAGGTTCTTTT
ATCCTTGATAAGAGTTTTTGCTATCCTAGGCTTTTTGTTATTCCAGATGA
TATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCATGGCATCAGCGGTAACTGCAG
GCACAGCCATGACTCTGCAAGATCAGTATGGGAGAGGTCAAAGTGGACAG
CCATCTTCCCTTGGTGCCTTCCTGCAGGGTCCAGGCTGTAAGAATTGTGC
CACTCCAACCCCGTGGAAGCTCTCATCACTGGGGAAGAAACTAACTAGCC
ACAGCCCAGCTATAGGCTTGCAAGCCTGCCCTAGATCTTGGTGACATAAA
TCATGGGACCTAGCTCTAGCCTGGAGAACTTCTGGGGGCAGAGTTAGGTG
TGAAGGATTTTGAAAGGTCTTTTTGGCTGCGCGACGCCTTGCTTTCAGTG
GCAAGATGATTCCAGAGAACTCAAATACCATGATATGTACCCATGATCCC
AGCACTTGGGAGGTGGAGACTGGAGGATCAGGAGTTCAAGACCAGTCTCA
GATACATAGAAAGTTCACTTCAGGACTGAGCTACATGAGACCCTGTCTCA
CAACTGTAGCAACAAATAAAGATAATCCTGGGGAAGAAAATGCCCCCAAG
TGCCTCACCCTGGTCTCTGAATTAGCTCAGTGGTGGCTCCTATATCCCAG
TGGATACAGGATATGGGCTATCACAGTGACCATGCGCTATCATGGTGACC
ATGGGACAACAGTAGCTGGCTGATATAAACCCAGAGTCATGATCTGTCTG
GAGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_l12.g1 MSMg01no288_l12.g1 CHROMAT_FILE:
MSMg01no288_l12.g1 PHD_FILE: MSMg01no288_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:52 2005
         (220 letters)



>mm_chr4_141684491_141685110
          Length = 620

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatcttcccttggtgccttcctgcagggtccaggctgtaagaattgtgccactccaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 419 agccatcttcccttggtgccttcctgcagtgtccaggctgtaagaattgtgccactccaa 360

                                                                       
Query: 61  ccccgtggaagctctcatcactggggaagaaactaactagccacagcccagctataggct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ccccatggaagctctcatcactggggaagaaactaactagccacagcccagctataggct 300

                                                                       
Query: 121 tgcaagcctgccctagatcttggtgacataaatcatgggacctagctctagcctggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgcaagcctgccctagatcttggtgacataaatcatgggacctagctctagcctggagaa 240

                                                  
Query: 181 cttctgggggcagagttaggtgtgaaggattttgaaagg 219
           ||||||||||||||||||| |||||||||||||||||||
Sbjct: 239 cttctgggggcagagttagttgtgaaggattttgaaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)