NNTTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCTGGGAACTCTGGCTAAGCTTAGAATCAGAAATCCT
CTGACTGGAAAGGGCTCACTGCAATGGTGCGAGAGGAGGGCGACGGGGAG
GGTCTAAGACATTCATAGGAAAGAAAGTGCTATGCATGCCTCCTGCAGTC
AACTCAGAGGTTACTGAAGCAAGCAGGGGCCAGCACAGACTCTGGGGCAT
CAAAGAACATATCAAGAAAAATGGAAGGCTCAGGGAAAAATTATAAAATT
TCATCTGGGGGCAGCAGGCACCCTGAGGATACAGAAATAAAAGATGGGTG
AGAAATGGGAAGAGTTGGTTTAGGTGATTAACGCCCCCCCCCTGACCAAC
GCACTGGACCATAGAGACTTAAGTGTTACCTTTCCCATGCAACCAAGTAC
ATTCTCTCCCATCATGCATTGCATTTGGACGCCATCAGCAAGCAACAGAA
GCCAAGGCCAAAACATTCTCTGCAATATTATACCATGGACCAAAAGAAGA
CCACAGTGCAGCTACATTCATTTCATTTGTATTCTTTGTTATCGATTTAA
GTAGTAGTTTTGTAAAGGTGGGTAAAAAGTAAAAAACACACCAACCTTCT
CGCAGCTCTGAGGGATGTAGGGGGGTTTGATGCCTATCACCATGAAATGA
GGAACAGGAGATATACAAGGGAAACAC

NAATTCGAATGAAGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCTATCAATAGGGCAG
GTGATGAGTTTGCCTAAAAGAGAACAATGAAATGATCTTGAAGTGTACAT
AGTTAGGTCTGACTCCAGGGACATGCAGTAAATGAAAGAAATAGGATACA
TTCAAGAAAACCCATGTGGTTAGGGGTGGGATGGGACTGAAGACTTTTGT
AATTGAAATACAATCTGCTAAATTCTTGGCATGAAATCACCCTAGCAGGA
CTGAATGAACGGGTGAAAAGTTGTTTGCTATGAGCTTAATATTGGACTTT
GTAGCAATATGAAAATCTGATTTTTTTTTCACCCCCACTCCCGCTCGTGT
AAACTGGAGAATAAGGAATAAAAATTATCTTGGCTTCTTGGAATCTGCAC
ATTAGGCACCACCTCAAAAGGGATTTTACAACAGTGTCTCGAAAGGATAT
CCCAGCAAAGCAACTTCAAACTGTTAGGACTTCTAGGTAAACACGCCTAA
GACTGGCAGATGTCTAAGCTGGGTAGGTGTTTGTTCACTTCCTTAAACTT
TACATGTTGCTTTGCCCTGTCCGTTCTCCATGCCTTGTTCAAGACGAGCA
CACACCCCGTGGTTCTGATCACGTGCTCTCCCTTTTTCTTCTAGCAAAAG
TGGCCTCAGGGTCCTGTCTGTTTGCTG

Query= MSMg01no288_n08.b1 MSMg01no288_n08.b1 CHROMAT_FILE:
MSMg01no288_n08.b1 PHD_FILE: MSMg01no288_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:00 2005
         (321 letters)



>mm_chr4_75780656_75781376
          Length = 721

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtctgggaactctggctaagcttagaatcagaaatcctctgactggaaaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtctgggaactctggctaagcttagaatcagaaatcctctgactggaaaggg 263

                                                                       
Query: 64  ctcactgcaatggtgcgagaggagggcgacggggagggtctaagacattcataggaaaga 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcactgcaatggtgtgagaggagggcgacggggagggtctaagacattcataggaaaga 323

                                                                       
Query: 124 aagtgctatgcatgcctcctgcagtcaactcagaggttactgaagcaagcaggggccagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtgctatgcatgcctcctgcagtcaactcagaggttactgaagcaagcaggggccagc 383

                                                                       
Query: 184 acagactctggggcatcaaagaacatatcaagaaaaatggaaggctcagggaaaaattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 acagactctggggcatcaaagaacatatcaagaaaaatggaaggctcagggaacaattat 443

                                                                       
Query: 244 aaaatttcatctgggggcagcaggcaccctgaggatacagaaataaaagatgggtgagaa 303
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaatttcaactgggggcagcaggcaccctgaggatacagaaataaaagatgggtgagaa 503

                         
Query: 304 atgggaagagttgg 317
           ||||||||||||||
Sbjct: 504 atgggaagagttgg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_n08.g1 MSMg01no288_n08.g1 CHROMAT_FILE:
MSMg01no288_n08.g1 PHD_FILE: MSMg01no288_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:00 2005
         (293 letters)



>mm_chr4_75935858_75936550
          Length = 693

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgtgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttg 431

                                                                       
Query: 61  aagtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggataca 371

                                                                       
Query: 121 ttcaagaaaacccatgtggttaggggtgggatgggactgaagacttttgtaattgaaata 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttcaagaaaacccctgtggttaggggtgggatgggactgaagacttttgtaattgaaata 311

                                                                       
Query: 181 caatctgctaaattcttggcatgaaatcaccctagcaggactgaatgaacgggtgaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 310 caatctgctaaattcttggcatgaaatcaccctagcaggactggatgaacgggtgaaaag 251

                                                             
Query: 241 ttgtttgctatgagcttaatattggactttgtagcaatatgaaaatctga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgtttgctatgagcttaatattggactttgtagcaatatgaaaatctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)