BAC Information

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BAC

Clone NameMSMg01-288N12
Chromosome4 (Build37)
Map Location 119,887,480 - 119,887,773
singlet/doubletsinglet
Overlap genenone
Upstream gene4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
Downstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288N12.T7 (MSMg01no288_n12.b1)MSMg01-288N12.TJ (MSMg01no288_n12.g1)
ACCAG418558AG418559
length764773
length of high quality
(start - end)
323 (45 - 367)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no288_n12.b1 PHD_FILE: MSMg01no288_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:01 2005CHROMAT_FILE: MSMg01no288_n12.g1 PHD_FILE: MSMg01no288_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAAAATCGAATGGCTGAGAAGCACCTAAAGAAATGTT
CAACATCCTTAGTCATCAGGAAAACGCAAATCAAAACAACTCAGATTCCA
TCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT
GCTAGCAAGGATGTGGAGAAAGAGGAACATTCCTCCATTGCTGGTGGGAT
TGCAAACTGGTACAACCACTCTGGAAATCAATCTGGTAATTCCTCAGAAA
ATTGGACATAGTACTACCTGAGGGCCCAGCTATACCATTCCTGGGCATAT
ACCCAGAAGATGTTCTTTTTTGTAATACCCACACCTGCTCCACTATGTTC
ATAGCAGCCTTATTTATAACAGCTAGATGCTGGAAACAACCCAAATGCCC
CTCAACAGAAGAATGGATATAGAAAATGTGTTACATTTACACAATGGAGC
ACTACTCAGCTATTAAAAACAATGACTTCATGAAATTCACAGGTAAATGG
ATGGAACTTGAAAATACCACCCTGAGTGAGATAACCCAATCACAAAAGAA
CACACATGGTATGTACTCACTGATAAGTGGATATTAGCCCAAAAGTTCGG
TATACCCAAGATATGATTCACAGACCATATGAAGCTCAAGAAGAAGGAAG
ATCAAAGTGTGGATGCTTCAGCGCTTCTTAGAAGGGGGAACAAAATTCAC
AGGAGGAAATATGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACAAGGGCTGGAGATCCCAGGGCCC
AGGGGATGTAGGCCTCCAGCACAAGCAGTAACTCTTATCCTGAAAGTCTG
GAGAAAGTGCTATAAGATTTGAGCGTGGGAAATTGTGTGGGTAGGTGTGT
GCACATGTATGTGCCTGGTGAAGATCTGTGGCTGCCGTTCCAGAGAGGGC
TGGAAGAGAAGCGATGTGTTCATGACCTGCCTAGAGACTCTCCTCTCTCA
GCCCTCTCCTCAGTCCAGCAGACAGTCAGGGAAGGAGAAGTAAATGGCTG
GGGTGTGTAGATTCTGTATTCTCTGCCGCCCGCCCAGTGCCTGGGAAGAG
TCAGGCAAGGGTTGAGGCCCCCTGTGCTGAAAAAAATGAATGTGTCTTCT
CAGGTGGTGTGTGGTGAGGTGGATGTCTGTCCCTTGCGCTATCTTTTCGT
TTACTTTTTTTTTTCTTTTTTTTCGTCTACTTTCTTTTTGCTTTTTTTTT
CATTTCTCTTTGTCCTTTTTTTTTTATTTCCTCTTTCCCTTGTCACTCCC
TTTTTCCCTCTTCAATTATTTATATTCCTCCTTTTCTCCTTTATTTCACA
TTCTCCACTCTTTCTCTTTCTTCATTCATTATCCTCACCTTTTGTTTTTT
ACATTTTCTCCTTTCTTTTCTTTCTCTTGATCTTTATCTTTCTTCCCCTC
CCCTCTTTTTTATTCTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_n12.g1 MSMg01no288_n12.g1 CHROMAT_FILE:
MSMg01no288_n12.g1 PHD_FILE: MSMg01no288_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:01 2005
         (294 letters)



>mm_chr4_119887280_119887973
          Length = 694

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaagggctggagatcccagggcccaggggatgtaggcctccagcacaagcagtaact 60
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 201 agacaagggctggagatcccagggtccagggaatgtaggcctccagcacaagcagtaact 260

                                                                       
Query: 61  cttatcctgaaagtctggagaaagtgctataagatttgagcgtgggaaattgtgtgggta 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cttatcctgaaagtctggagaaagtgctacaagatttgagcgtgggaaattgtgtgggta 320

                                                                       
Query: 121 ggtgtgtgcacatgtatgtgcctggtgaagatctgtggctgccgttccagagagggctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtgtgcacatgtatgtgcctggtgaagatctgtggctgccgttccagagagggctgg 380

                                                                       
Query: 181 aagagaagcgatgtgttcatgacctgcctagagactctcctctctcagccctctcctcag 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aagagaagcgatgtgttcatgacctgcctagagactctcctctcacagccctctcctcag 440

                                                                 
Query: 241 tccagcagacagtcagggaaggagaagtaaatggctggggtgtgtagattctgt 294
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagcagacagtcggggaaggagaagtaaatggctggggtgtgtagattctgt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)