Query= MSMg01no288_o16.b1 MSMg01no288_o16.b1 CHROMAT_FILE:
MSMg01no288_o16.b1 PHD_FILE: MSMg01no288_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:07 2005
(320 letters)
>mm_chr4_58503087_58503806
Length = 720
Score = 514 bits (266), Expect = e-150
Identities = 308/332 (92%), Gaps = 18/332 (5%)
Strand = Plus / Minus
Query: 5 gaattcctaatagatac-ctttaagggaggaaggtttattctggctcacaggccagaggt 63
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattcctaatagaaacaatttaagggaggaaggtttattctggctcacaggccagaggt 489
Query: 64 cacaggctgtcatgaccagaaaggcaagttggcaggagcatgaggtggcggtcacataga 123
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cacaggctgtcatggctagaaaggcaagttggcaggagcatgaggtggcggtcacataga 429
Query: 124 gaagtagagttatagctgacctggccttcaactcctggccccacccctatgtgagcccc- 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaagtagagttatagctgacctggccttcaactcctggccccacccctatgtgagcccca 369
Query: 183 ----t------------cccctatgtgagctccagtcctatgtgagccccacccctatgt 226
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cccctatgtgagccccacccctatgtgagctccagtcctatgtgagccccacccctatgt 309
Query: 227 gagccagctaagactcaggtccctaagagtctctccaaaatagcaccaccagctgaagac 286
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagccagctaagtctcacgtccctaagagtctctccaaaatagcaccaccagctgaagac 249
Query: 287 caattatctaaaggcctgtgaggccgtctatg 318
||||||||||||||||||||||||||||||||
Sbjct: 248 caattatctaaaggcctgtgaggccgtctatg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_o16.g1 MSMg01no288_o16.g1 CHROMAT_FILE:
MSMg01no288_o16.g1 PHD_FILE: MSMg01no288_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:07 2005
(288 letters)
>mm_chr4_58300752_58301439
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Plus
Query: 1 tgagagtaaataacattatgaaaagtgaaatcctaaagatttttaatgctgtgctgtacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagagtaaataacattatgaaaagtgaaatcctaaagatttttaatgctgtgctgtacg 260
Query: 61 gcgtattttgatagaaaagagccatttgaatgtgttgttctcctaatattgaaaagtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgtattttgatagaaaagagccatttgaatgtgttgttctcctaatattgaaaagtatg 320
Query: 121 acagctttgctgaacttgctcacagcagtagctcgtaaaagagttggttagagagtttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagctttgctgaacttgctcacagcagtagctcgtaaaagagttggttagagagtttgc 380
Query: 181 ttgtccaagtccagtatggagactgaaatcaaacgacctgtacataatacacagtatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtccaagtccagtatggagactgaaatcaaacgacctgtacataatacacagtatagc 440
Query: 241 gctcggtatattgtacagggtcagaatggacagtcttaaaacgggact 288
|||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcggtatagtggacagggtcagaatggacagtcttaaaacgggact 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
