BAC Information

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BAC

Clone NameMSMg01-288P21
Chromosome4 (Build37)
Map Location 55,487,336 - 55,668,608
singlet/doubletdoublet
Overlap geneKlf4
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288P21.T7 (MSMg01no288_p21.b1)MSMg01-288P21.TJ (MSMg01no288_p21.g1)
ACCAG418668AG418669
length749745
length of high quality
(start - end)
237 (133 - 369)194 (131 - 324)
definitionCHROMAT_FILE: MSMg01no288_p21.b1 PHD_FILE: MSMg01no288_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:13 2005CHROMAT_FILE: MSMg01no288_p21.g1 PHD_FILE: MSMg01no288_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,487,336 - 55,487,572)(55,668,415 - 55,668,608)
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAAACG
CGGAATTCATTCAAGATTTTCCACAAAATTCCAAAGAGCATAATGACAGT
ACTGTTGAAAATAACCCTCCCGTTTTGCCCTGCCAAGGAACCATGCTGCC
TGCAGGGTCTCATGTCATATTTCTCCAGAGGTTGCATGTAAAACTTGAGC
CACTGCCCGTTAGTAGCCTTCCGCTCTAGACACATGCCTGGCTCTTTGTG
GAGTATCCCAGGCAGGGGCTAGCAGCAGGACTCAGACCTCTGAGTCACCT
GAGACAAAATGGGGACTTGAGCTCCAGATATTCTAGGAGAGGACTCCTCA
CAGCCTCGTCCTGCCTGGTGTTTTTTAGCCCTGATGCCGCGCAAGCTGTT
TCCAGTGGAGGAGTTCAATAAAGCACCCCGGACCAAGAATTTCTTACGTG
GAGGGAAATAATACAAACAAGATGCCGCTGAGCATACAATAAAATAGCAA
TTTCCAAAACTATAGTAGCTGGATTGGTGATACATGCCTGTAATCCTAGA
ATATGGGAGGCAGAGACAGGAGGATTGCCTCACATTCAAGGCAAGATATT
AACATGTAATGTCCCCTATTATGCAGGACTACATATTGAAACCTTCTTTA
AAAAGTATACTAAACCCCTGACAAATAAACAAACAACAACAGCAACGGAA
TAGAAAGGAAGGTAGGCAGGAAGGACTCCATCATTAGCTCAATTCTATN
NAATCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCGAAAATCTCTCCATAAAAACTGCATCTCCTG
CTGCAAAACCTTTTTCTTCCCATGTCACCTCTCAGTTTCCTTACCATGGG
GAGCCTCTGGCCATTCCCTCAAATTCAACTATGTCTCCTGGGCCTGAGTC
TGAGTGCCTAGGAGGGAGTCAGTGGGCACTTTATGTGGGCTCCTTGTGAG
CTCAGTAGTCTCTGTGGCTGAGTGACTCACTTGAGAAGGTTATGTAAGGC
TAACTCATGTAATATCAGCTCAGCCTCTTTTTATGAACACAGACTTCATG
GCTTAAACTTGGCCCATTTTTGTTTGCCCGCCACCCGCCTGTAATCCCAG
CACTTGGAAGGCAGAAAGAGCACCCCCAGCTTAAAAACAAGGTCACCCTA
GTCTACGTAGTGAGTTCTAGGCTAGCCACAGGTGTTATCACTAGGCCCTG
TCATAGGAAAAGAAATGTGTCCATGCATAGCTCTGATGATACAAAATTCT
ATAGCAAAGTATCAGTAAGGCTAGCCACTCCTTAAAGTATATACATAGAT
AGTTCTTGAAATATGAAAGGACATGTGATAAGAAATTCACTATAGATTGA
AAATACTGAAAGTCTAAACCATATTTGATGTACCTGTCTAATATACCTAA
TCTAGCACAGATCCTAGTTTAGACTGGTGTTCTATCTGCTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_p21.b1 MSMg01no288_p21.b1 CHROMAT_FILE:
MSMg01no288_p21.b1 PHD_FILE: MSMg01no288_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:13 2005
         (237 letters)



>mm_chr4_55487136_55487772
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaggaaccatgctgcctgcagggtctcatgtcatatttctccagaggttgcatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaggaaccatgctgcctgcagggtctcatgtcatatttctccagaggttgcatgtaaa 260

                                                                       
Query: 61  acttgagccactgcccgttagtagccttccgctctagacacatgcctggctctttgtgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgagccactgcccgttagtagccttccgctctagacacatgcctggctctttgtgga 320

                                                                       
Query: 121 gtatcccaggcaggggctagcagcaggactcagacctctgagtcacctgagacaaaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatcccaggcaggggctagcagcaggactcagacctctgagtcacctgagacaaaatgg 380

                                                                    
Query: 181 ggacttgagctccagatattctaggagaggactcctcacagcctcgtcctgcctggt 237
           |||||||||||||||| |  | |||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacttgagctccagacacacaaggagaggactcctcacagcctcgtcctgcctggt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no288_p21.g1 MSMg01no288_p21.g1 CHROMAT_FILE:
MSMg01no288_p21.g1 PHD_FILE: MSMg01no288_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:13 2005
         (194 letters)



>mm_chr4_55668215_55668808
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtttccttaccatggggagcctctggccattccctcaaattcaactatgtctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctcagtttccttaccatggggagcctctggccattccctcaaattcaactatgtctcctg 335

                                                                       
Query: 61  ggcctgagtctgagtgcctaggagggagtcagtgggcactttatgtgggctccttgtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggcctgagtctgagtgcctaggagggagtcagtgggcactttatgtgggctccttgtgag 275

                                                                       
Query: 121 ctcagtagtctctgtggctgagtgactcacttgagaaggttatgtaaggctaactcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctcagtagtctctgtggctgagtgactcacttgagaaggttatgtaaggctaactcatgt 215

                         
Query: 181 aatatcagctcagc 194
           ||||||||||||||
Sbjct: 214 aatatcagctcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)