BAC Information

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BAC

Clone NameMSMg01-289C22
Chromosome4 (Build37)
Map Location 69,760,072 - 69,760,383
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneCdk5rap2, Megf9, LOC100039565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C22.T7 (MSMg01no289_c22.b1)MSMg01-289C22.TJ (MSMg01no289_c22.g1)
ACCAG418805AG418806
length744473
length of high quality
(start - end)
315 (43 - 357)---
definitionCHROMAT_FILE: MSMg01no289_c22.b1 PHD_FILE: MSMg01no289_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:26 2005CHROMAT_FILE: MSMg01no289_c22.g1 PHD_FILE: MSMg01no289_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTGAAGAAGTGAAGGATATGAGAGGTTGCCTAACATATGCAAAGATA
TTGGAGGGAGAAGAAAATACCTGCCTCATGTTTGTACCCCAAAGGTCAGG
ACATTCAATAATAGTTTATCTCAATTGTTCTTCCTGGCAGGAAGAGTTTT
AAAGTATGAAAACACTGACTTCTCTTTTTTGTCTTAAGCCAGATGTCCTA
GCATGTATCAGCTTCCCTCCTATTTCAAGCATTATACAGAGATGACTGAT
CTCTGGATAAGATGATCTGTGCAGTTTGCTGTCCCAGCCTGTTTTATTCC
TGGCACCAGGTCTTTCTTGTTCCTCCCCCCCCACATACATTACAGTCCAG
GTGACCCAAGTAGAACCCCCTCCAACCCCAGAAAAATCCTTCAGTAGAGA
TGAGACGTGACTCACATATGGCCAATCCTTTGGGTCATTGCAATTATTTC
AGAAATGGACACATGACCCAAATTTGCCCTGTCGGTCTCAGCACCTGGAA
TTAGAAGGAGAAGCTGTTATCTGTACATGGCTAAGAAAGAACCATTGTTA
GTTCTGCTCCCTAGAGAGATCACCCTCGGGAATGAAACAAATATGACAAG
AAGCAGAAGCAGAGTCCCTGAGACATCATGTAGTTCCATATCAGTGAACT
ACCAGGACTCATAGAACCTCTCAGTTATGTAGCACAATGGTTCC
CGAACGCAGAGGGCGCGTCTCACCGAGGACCAAAAGTCCCGAAATGGCTT
CTGATTTTATCTACACCCCTCTTCCCTGCTCACCTACCCCCCNNNNNNNN
TGCCATGCTATNGGTAGGCCGTGGGGNCCGCCCTGGCCTCCCACCATTAG
GGGACCTATAGAAAGGTCCCGCGAATTCCCTTGCCTGAAGGAAGGGCCCA
AGGCGGGGCCCCCCCAGGGGGTTTTTTCCGCACCAAAAATCCGGGGCCCC
CCGCGCAATGGGTCTCCCCCCCCGGGACCCCCAGGGGAAAAAAACGGGGG
TTTTCCCCCAAAAAAAAAAAAACTCGGGGGGTCCTCTTTTTCCTTTCGAA
AAAAGTCCTTCTCTTCCCCCGGCCGCACATTTTCTCCCCACCCCCCTCTC
CTACCCTTTTTTTTTCCCCCAACACACGGGGGGTGGCGGTAACAATAAAA
AAATCTTTCCCCCCCCCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c22.b1 MSMg01no289_c22.b1 CHROMAT_FILE:
MSMg01no289_c22.b1 PHD_FILE: MSMg01no289_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:26 2005
         (315 letters)



>mm_chr4_69759869_69760583
          Length = 715

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgaagaagtgaaggatatgagaggttgcctaacatatgcaaagatattgga 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgaagaagtgaagggtatgagaggttgcctaacatatgcaaagatattgga 263

                                                                       
Query: 64  gggagaagaaaatacctgcctcatgtttgtaccccaaaggtcaggacattcaataatagt 123
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggagaagaaaagacctggctcatgtttgtaccccaaaggtcaggacattcaataatagt 323

                                                                       
Query: 124 ttatctcaattgttcttcctggcaggaagagttttaaagtatgaaaacactgacttctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatctcaattgttcttcctggcaggaagagttttaaagtatgaaaacactgacttctct 383

                                                                       
Query: 184 tttttgtcttaagccagatgtcctagcatgtatcagcttccctcctatttcaagcattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttgtcttaagccagatgtcctagcatgtatcagcttccctcctatttcaagcattat 443

                                                                       
Query: 244 acagagatgactgatctctggataagatgatctgtgcagtttgctgtcccagcctgtttt 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagagatgactgatctctgaataagatgatctgtgcagtttgctgtcccagcctgtttt 503

                       
Query: 304 attcctggcacc 315
           ||||||||||||
Sbjct: 504 attcctggcacc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)