BAC Information

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BAC

Clone NameMSMg01-289C24
Chromosome4 (Build37)
Map Location 69,940,995 - 69,941,228
singlet/doubletsinglet
Overlap geneCdk5rap2
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneMegf9, LOC100039565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C24.T7 (MSMg01no289_c24.b1)MSMg01-289C24.TJ (MSMg01no289_c24.g1)
ACCAG418809AG418810
length754752
length of high quality
(start - end)
---234 (438 - 671)
definitionCHROMAT_FILE: MSMg01no289_c24.b1 PHD_FILE: MSMg01no289_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:27 2005CHROMAT_FILE: MSMg01no289_c24.g1 PHD_FILE: MSMg01no289_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TGAAGAATTGCACGGTATGAGAGGTTGCCTAACATATGCAAAGATATTGG
AGGGAGAAGAAAAGATCTGCCTCATGTTTGTACCCCTTAGGTCAGGACAT
TCAATAATATTTTATCTCAATTGTTCTTCCTGGTGGGAAGAGTTTTAAAG
TATGACAACACTGACTTCTCTTTTTTGTCTTATACCAGATGTCCTAGCAT
GTGTCAGCTTCCCTCCTATTTCAAGCATTATACAGAGATGACTGATCTCT
GGATGATATGATCTGTGCAGTTTGCTGTCCCATGCTGTTTTATTCCTGGC
ACCAAGACCTTTTTGTTCCTTCCCAACATCTACATTACTGTCCATGTGAG
CCAAGTAGAACAACTCTCTACCCCTGTCCAATCCTTCAGTAAAGATGAGA
CGTGACTCACATATGGTCAATCCTTTGGGTCATTGCGATTATTTCACATA
TGCACACATGACCCAGATTTGCCCTGTCGGTCTCAGCGCCTGTAATTAGA
ACGAGAAGATGTTATCTGTACTTGTCTAAGATAGAACCATTGTTATTTCT
GCTCCCTACATAGATCACCCTCGGGAATGAAACAAATATGACGAGAAGCA
GAAATCCAGTCCCTGAGACATCATGTAGTTCCATATCAGTGAACTACAAG
GACTCATAGAACCTCTCAGGTATGTAGCACAATGTTTCCTTCCTTCCTTC
CTTC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGACTGAAGGAAAGGGCCTAGGCAGGGC
ACCCACTGTGTCTGCCTGCAAGACCATTCCTGTTCCCTTGCCAAACTGCT
CTCCAGCCACAGTAGCCCAAAGTGGAGAAGTGTGGTTTTGCTGAGTGAGT
GAATGTCTGTGTGCTGGCTTTCTGTCTGAGATGCTCTGTAACCTGTCAGT
ACAGTCAAACAGCATCAGGCTTTCTCCGTAGTGTCTGGTTGGACGCGCTC
ACCGTCCTTTGGGGAAAGGGGTTGGGATTGAGAATTCCTAAGCAGAGATG
TGTTCTGGAGATTTTTTTTTACACCCCCCGACTCTGGTACCTCCCTGAAG
GCTGTGGGACGCTGCCCCCCTGACGGCTGTTTAGTAACAGAGAAGTAACT
GTACACACTGCTTCATAGCATCAGAATGGAGAATTACGTTTATTTTCTGA
CCACTAAATTACTGCTTTTGTGCCTTCCAAACAGAATTAGATATATCATT
AGCAAAATTGCTTTTGATTGTTTTAAATTATACACCAAAACTGTAATTTC
TAGAAAAGGTTTTTCTAAAGATATCAGTAGAGACTAAAACAAAAAAATAT
ATATACTGCCATTATATTAATGGTACTCANAATGCAAATTTGTGCAATTT
GGCTAGAATAGAACTGCTCTTCTGTGCCCCAGCTCCTTCAGTTTGTACCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c24.g1 MSMg01no289_c24.g1 CHROMAT_FILE:
MSMg01no289_c24.g1 PHD_FILE: MSMg01no289_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:27 2005
         (234 letters)



>mm_chr4_69940795_69941428
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagaagtaactgtacacactgcttcatagcatcagaatggagaattacgtttattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cagagaagtaactgtacacactgcttcatagcatcagaatggagaattacgtttattttc 375

                                                                       
Query: 61  tgaccactaaattactgcttttgtgccttccaaacagaattagatatatcattagcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgaccactaaattactgcttttgtgccttccaaacagaattagatatatcattagcaaaa 315

                                                                       
Query: 121 ttgcttttgattgttttaaattatacaccaaaactgtaatttctagaaaaggtttttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgcttttgattgttttaaattatacaccaaaactgtaatttctagaaaaggtttttcta 255

                                                                 
Query: 181 aagatatcagtagagactaaaacaaaaaaatatatatactgccattatattaat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagatatcagtagagactaaaacaaaaaaatatatatactgccattatattaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)