Query= MSMg01no289_d19.b1 MSMg01no289_d19.b1 CHROMAT_FILE:
MSMg01no289_d19.b1 PHD_FILE: MSMg01no289_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:30 2005
(266 letters)
>mm_chr4_88352949_88353613
Length = 665
Score = 468 bits (242), Expect = e-136
Identities = 257/262 (98%), Gaps = 1/262 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagatcttcaccatcacacatagaaaagagttcttgactagctgaaattgcaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaattctcagatcttcaacatcacacatagaaaagagttcttgactagctgaaattgcaa 356
Query: 65 aatgaaccatgttgatccagtaaacaagagaaatgtatgcaattctagggcaaaggggac 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatgaaccatg-ggatccagtaaacaagagaaatgtatgcaattctagggcaaaggggac 297
Query: 125 tggaaactattaaaggaactgaaaatacaaaacctgcaacacagctgtacagagaacata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tggaaactattaaaggaactgaaaatacaaaacctgcaacacagctgtacagagaacata 237
Query: 185 actttgtgttgaaattcttctctgtttagagatgtgtgtgtgtgtgtgtgtgtgtgtttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 236 actttgtgttgaaattcttctctgtttagagatgtgtgtgtgtgtgtgtgtgtgtgtgtg 177
Query: 245 tgtgtgtgtgtgtgtgtgatgt 266
||| ||||||||||||||||||
Sbjct: 176 tgtttgtgtgtgtgtgtgatgt 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 665
Length adjustment: 9
Effective length of query: 257
Effective length of database: 656
Effective search space: 168592
Effective search space used: 168592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no289_d19.g1 MSMg01no289_d19.g1 CHROMAT_FILE:
MSMg01no289_d19.g1 PHD_FILE: MSMg01no289_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:30 2005
(631 letters)
>mm_chr4_88182267_88183297
Length = 1031
Score = 1116 bits (577), Expect = 0.0
Identities = 622/653 (95%), Gaps = 27/653 (4%)
Strand = Plus / Plus
Query: 1 aaggtgtgccatcatgcccaccttgaacctccaattttaaaggttcccaagccacagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 184 aaggtgtgccatcatgcccaccttgaacctccaattttaaaggttcccaagtcacagaga 243
Query: 61 ctcgctcaaactttgcttaatttttcctttctagactcttatttcagggtgttgacgaca 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cgcgctcaaactttgcttaatttttcctttctagactcttatttcagggtgttgacgaca 303
Query: 121 aatgtggtactggtaagaacctttttgtccttctgtatacaaaagatgaccagatgatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aatgtggtactggtaagaacctttttgtccttctgtatacaaaagatgaccagatgatct 363
Query: 181 tccagcctgcactcttctacagttggaatgttctcatcgtgggttaaggatcctgagaca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tccagcctgcactctcctacagttggaatgttctcatcgtgggttaaggatcctgagaca 423
Query: 241 cacaggattgctcacccaggaccatccatcc-----------------cgttggcgcaga 283
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 cacaggattgctcacccaggaccatccatcctgtccctgacagactcccgttggcgcaga 483
Query: 284 gcctggatttgcttttcctttggcgtaacagacagctctgtgcacagctgctttctcgtc 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcctggatttgcttttcctttggcgtaacagacagctctgtgcacagctgctttctcgtt 543
Query: 344 caccccc-----agcgatgggtttagggacttgcaagtgtcaacctgactggatgattaa 398
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ca-----ttgttagcgatgggtttagggacttgcaagtgtcaacctgactggatgattaa 598
Query: 399 atggcaaggtgtcatttctgggtattctgtgatgtgttttcagaaggaaatgatgggtga 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 atggcaaggtgtcatttctgggtattctgtgatgtgttttcagaaggaaatgatgggtga 658
Query: 459 ggtagtaaactgaatcaggagggtcagtagaggcaccaatcacttaggggtccaggtaga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ggtagtaaactgaatcaggagggtcagtagaggcaccaatcacttaggggtccaggtaga 718
Query: 519 acaaacggggcaaagagtgtgtgccttcctctattcccccctgcatttggacaagtgcct 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acaaacggggcaaagagtgtgtgccttcctctattcccccctgcatttggacaagtgcct 778
Query: 579 ttttctgcctctgagcacaactgcaggatctgtcagtccttttgactgcaatg 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttttctgcctctgagcacaactgcaggatctgtcagtccttttgactgcaatg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
