Query= MSMg01no289_i16.b1 MSMg01no289_i16.b1 CHROMAT_FILE:
MSMg01no289_i16.b1 PHD_FILE: MSMg01no289_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:52 2005
(317 letters)
>mm_chr4_139204181_139204897
Length = 717
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Plus
Query: 5 gaattctcattcgctgcggaacgccctggtacctggcaggttccccgcctgtctgctttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattcgctgcggaacgccctggtacctggcaggttccccgcctgtctgctttt 264
Query: 65 ctctcctcatcctgggcctggtgactcagagggcctcagaacctaaagggatattctcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctcctcatcctgggcctggtgactcagagggcctcagaacctaaagggatattctcag 324
Query: 125 gaccctgtcagggaaggagacagctctggtgtctcacctcaccactcagagactcctgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccctgtcagggaaggagacagctctggtgtctcacctcaccactcagagactcctgac 384
Query: 185 cttggccttgtcccctacacatgtccagtgagataggacctcagccagatgactgcaggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttggccttgtcccctacacatgtccagtgagataggacctcagccagatgactgcaggg 444
Query: 245 gcatcagctggctttgtcccttggtctgtgctatctccttctgcagggacttgtatctag 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gcatcagctggctttgtcccttggtctgtgctagctccttctgcagggacttgtatctag 504
Query: 305 ccatatgccttt 316
||||||||||||
Sbjct: 505 ccatatgccttt 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_i16.g1 MSMg01no289_i16.g1 CHROMAT_FILE:
MSMg01no289_i16.g1 PHD_FILE: MSMg01no289_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:52 2005
(344 letters)
>mm_chr4_139368246_139368989
Length = 744
Score = 598 bits (309), Expect = e-175
Identities = 333/341 (97%), Gaps = 3/341 (0%)
Strand = Plus / Minus
Query: 1 atcacaaagcctacctacagatgcaaaaaccgagacagggtggtcacaccggggcagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 atcacaaagcctacctacagatgcaaaaaccgagacagggtggtcacactggggcagggc 429
Query: 61 tggctgtctcagtggacatctgtgttcaactggaccatcttgaactaatgtgagggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggctgtctcagtggacatctgtgttcaactggaccatcttgaactaatgtgagggacag 369
Query: 121 aataagccccatctcatttaaccagagagccttgttatagcttggctggtataaataaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aataagccccatctcatttaaccagagagccttgttatagcttggctggtataaataaat 309
Query: 181 aaataaatagctcagagaggttcattcattcagttggtgtcacactcaactggaccatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaataaatagctcagagaggttcattcattcagttggtgtcacactcaactggaccatct 249
Query: 241 tgaactaatgtgagggacagaataagccccatctcatttaaccagacatgttcttgttat 300
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 248 tgaactaatgtgagggacagaataagccccatctcatttaaccagaca-g-ccctgttat 191
Query: 301 accttcgcctggttcaaataaataaataaataaataaataa 341
| ||| | |||||||||||||||||||||||||||||||||
Sbjct: 190 agctt-ggctggttcaaataaataaataaataaataaataa 151
Score = 209 bits (108), Expect = 2e-58
Identities = 137/156 (87%), Gaps = 16/156 (10%)
Strand = Plus / Minus
Query: 86 tcaactggaccatcttgaactaatgtgagggacagaataagccccatctcatttaaccag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaactggaccatcttgaactaatgtgagggacagaataagccccatctcatttaaccag 204
Query: 146 agagccttgttatagcttggctggt----ataaataaataaataaata------------ 189
| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 203 acagccctgttatagcttggctggttcaaataaataaataaataaataaataaataaatg 144
Query: 190 gctcagagaggttcattcattcagttggtgtcacac 225
||||||||||||||||||||||| ||||||||||||
Sbjct: 143 gctcagagaggttcattcattcacttggtgtcacac 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
