Query= MSMg01no289_m20.b1 MSMg01no289_m20.b1 CHROMAT_FILE:
MSMg01no289_m20.b1 PHD_FILE: MSMg01no289_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:11 2005
(320 letters)
>mm_chr4_14533509_14534228
Length = 720
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%)
Strand = Plus / Plus
Query: 5 gaattctatagtacacatgagaccatacatataatctgatacttctttgcagagtggggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatagtacacatgagaccatacatataatctgatacttctttgcagagtggggt 264
Query: 65 ttaactttctcttccggggtagattatatacagccctcttacttggaaggggttaatttc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaactttctcttcaggggtagattatatacagccctcttacttggaaggggttaatttc 324
Query: 125 ccaagaataatctagctactcccagagaggattaggtaactcatgtgatttaggtggata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagaataatctagctactcccagagaggattaggtaactcatgtgatttaggtggata 384
Query: 185 agtattctataccaaacactaaggcccttgtgaaaatgaggaaataccaagccagagaag 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 agtattctataccaaacactaaggcccttgtgaaaatgaggaaataccaaaccagagaag 444
Query: 245 aagtgcttggtgccaatagctttctctgagcaagactaagcagccactgccctgttagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtgcttggtgccaatagctttctctgagcaagactaagcagccactgccctgttagac 504
Query: 305 atggcatgctgccgc 319
|||||||||||||||
Sbjct: 505 atggcatgctgccgc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m20.g1 MSMg01no289_m20.g1 CHROMAT_FILE:
MSMg01no289_m20.g1 PHD_FILE: MSMg01no289_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:11 2005
(294 letters)
>mm_chr4_14721160_14721853
Length = 694
Score = 416 bits (215), Expect = e-121
Identities = 230/235 (97%), Gaps = 1/235 (0%)
Strand = Plus / Minus
Query: 56 tatatatatgtatatgtatatgtatgtgtgtatatgccaaacttaatccttcatttcttg 115
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 524 tatatatatatatatgtat-tgtatgtgtgtatatgccaaacttaatccttcacttcttg 466
Query: 116 catctttttattatactggcttcattttatttcagagtaatgtcacatagttttcaaaca 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 catctttttattatactggcttcattttatttcagagtaatgtcacatagttttcaaacg 406
Query: 176 cacctaatttttttccaccaggacttccattgtccagcctttaactaagctgattgtcct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cacctaatttttttccaccaggacttccattgtccagcctttaactaagctgattgtcct 346
Query: 236 ctggttttactggatgctgtcagtccaggatgtcattgacaatcatcctaaagtg 290
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 345 ctggttttactggatgctgtcagtccaggatgtcactgacaatcatcctaaagtg 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
