BAC Information

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BAC

Clone NameMSMg01-290D05
Chromosome4 (Build37)
Map Location 25,663,693 - 25,663,985
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D05.T7 (MSMg01no290_d05.b1)MSMg01-290D05.TJ (MSMg01no290_d05.g1)
ACCAG419546AG419547
length733730
length of high quality
(start - end)
468 (131 - 598)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no290_d05.b1 PHD_FILE: MSMg01no290_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:40 2005CHROMAT_FILE: MSMg01no290_d05.g1 PHD_FILE: MSMg01no290_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATCCGCG
GAATTCTCACCTGAGGATTACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCCAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGCCTAAGATCAAAAATTCAGGTGGATAT
TAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCT
TAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTG
GAGCTGAGATGAAAGGATGGTCCATGTAGAGACTTCCATATCCAGGGATC
CACCCCATAATCAGCATCCAAATGATGACACCATTGCATACACTAGCAAG
ATTTTATGGAAAGGACCCAGATGTAGTTGTCTCTTGTGAGACTATGCCGG
GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATC
ACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGG
ATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGG
AGCTCTTGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCAT
CACTGGAAAGAGAGGCCCATTGGACATGCAAAC
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAAGGAACCATCTAATACATTGTA
AATTCTACTGCAGCTAATTGGCCAAAGCTTCAATAGCACCTAAAGTGATT
TAGAAATAAGAATTTTCTAACATTACATTCATTAATTCATTGTTTCGGAT
TCCCTTCTAGCAGACATGAGTGTGTTCATTTATCATTTAATTGACCTCTT
AGAGGTGAGTGCTGATTTTACATCCAGTTTCACAAACTACACTGTGATGT
GCACATGGATGTATTGGCTTGAGTAGGTTTCTTAGAGCAACACAGAGGTG
TGATTTGTAGAGCAAGCATGTAATGTTTTACTCAAATTGAACTTACCTGA
AAATGGTAGGGCCTTAATAATTTTCATCCTATAACAACGCCAACCTGGAT
ATATAAAAATATATATTTGCTGCACACATACATGTGGCAACTTAAAGCTC
TCATAGTGTTAAAAAAATCCTTTTCCCCATTTCCCCAATGACACTTTTCA
TCTTTAAATGACTCATTTTGCATCATAATGATGCAAGACCAACATTCTTT
GAACTTCTAAGTATGTCTACTTATTAGTTAGCCATACATCTCTACTTTTG
ATTTGTGACATGGAATTTTAGTTCATTTCCCTTTTGTAACATAGGTTGGT
CTTCAAGTATATTTTAAGAAAACTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d05.g1 MSMg01no290_d05.g1 CHROMAT_FILE:
MSMg01no290_d05.g1 PHD_FILE: MSMg01no290_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:40 2005
         (293 letters)



>mm_chr4_25663493_25664185
          Length = 693

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaggaaccatctaatacattgtaaattctactgcagctaattggccaaagcttcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 accaaggaaccatctaatacattgtaaattctactgcagctaattggccaaagtttcaat 434

                                                                       
Query: 61  agcacctaaagtgatttagaaataagaattttctaacattacattcattaattcattgtt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 433 agcacctaaagtgatttagaaataagaactttctaacattacattcattaattcattgtt 374

                                                                       
Query: 121 tcggattcccttctagcagacatgagtgtgttcatttatcatttaattgacctcttagag 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 373 tcggattcccttctagcagacatgagtgtgttcatttaccatttaattgacctcctagag 314

                                                                       
Query: 181 gtgagtgctgattttacatccagtttcacaaactacactgtgatgtgcacatggatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 gtgagtgctgattttacatccagtttcacaaactacactgtgatgtgcacatggatggat 254

                                                                
Query: 241 tggcttgagtaggtttcttagagcaacacagaggtgtgatttgtagagcaagc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggcttgagtaggtttcttagagcaacacagaggtgtgatttgtagagcaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)