BAC Information

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BAC

Clone NameMSMg01-290E02
Chromosome4 (Build37)
Map Location 139,264,146 - 139,423,043
singlet/doubletdoublet
Overlap genePax7
Upstream geneUbxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream geneGm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E02.T7 (MSMg01no290_e02.b1)MSMg01-290E02.TJ (MSMg01no290_e02.g1)
ACCAG419584AG419585
length720710
length of high quality
(start - end)
313 (36 - 348)288 (59 - 346)
definitionCHROMAT_FILE: MSMg01no290_e02.b1 PHD_FILE: MSMg01no290_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005CHROMAT_FILE: MSMg01no290_e02.g1 PHD_FILE: MSMg01no290_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,264,146 - 139,264,455)(139,422,760 - 139,423,043)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTCGACTAGGCTGGCCTTGAACTCACAAAGATCTGCCTGCTTCTGCCTAG
GGCTCTGGATCCACTCATTGGTGGAAAGTGAGGTATAGCCTGAGCCAGGT
GACATCAGCTCTCACTTCCCTGCGTGTAAATGAGGATGATAGACTGAGAG
AGCAACACATGCCAAAGGCCTGGGGCACAAACCAGCCCTAGGTGCGAGGT
GGGTGGGTATAGGATAAGATAGAGCTGCGATCTGTGTGGACTGCAATGGC
TACTGTGACTGAGTTACTGCTGCCCCCTCAATACTCTGCTCCCAGTCCAG
TTTGTTTTTCTGCCTGCCACTCTAAACCCCAGCTTTCCTGAGGGCACCAC
CACTGTCCTCTCCCAATACAGACTCTGATGCCTAGCCTGGCTTTATCAGC
AGGAGCTGATGAACAAAAACATCAGGCTTCCCCAACACTGCCCCGGGACC
TTGTCTCTCTCCCAGATGTGGCCTCCCATTTTTCCTCCCACAGCTCCCAG
ATCACTCATGACTTCCTCACACTGGAATAGAGGCACCACAGGCCCCAGAT
TTCTGCTTGTCTTGTTCCTAGATGAGTCCTCAGTTTCTAGAACACTCCTG
ATCTCTGTGAACGCTTTCATGAGTCCACATGTCAGAGAAGTGAGACAGTA
GTCCAGGCTGCAAGCCAGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGGAGCTACTTCCTGCTTGTTCTTCTCCTTTGTTTTCTGCTA
GTTTTCCTAATTAAAATAGTTCTTGGAATAGAACACATGTACAGAGAAGT
CACAAGTCATTCAGGGCTGACATGATGGATTTCCACCCTGTGAAGCAGCC
ACGCCCACTGAAAGCCAGATACAACCTGCAGCCTGCAAGCCCCTGTCACA
CTGGAACTGGTCACTGTTGTTCTATAACTATTGTCCTGTGTTAGCTGCTT
TTAATCATTAATATTGTTTGTGGCACAGGGTCCCCTATAGCCTATGTTAT
TCTCCAACTCACTAAGTAGTGGAGGATGGCCTTGAACTCCCGATCCTCCT
GTCTCCACCTAGACAGTATGGGACTTTCAGGCATGTACTATCATGTCCAG
TCTCTACTAGAGATCAAAGTGCAGTCTTTATACATGCCAGGCTTGCGTTC
ATTGTTGGCTCATGAACATGAGACATGTCTGTCCTCTGCCACTGGGCTGC
ACCCCTGGCCCTAAGCTCTGTCCTTTAATCAAGTAGGTGTCCTGGGGTCT
GGCTACCAGTACACCATGCCGCGTGAGAGCTGCCCATGCCCTGCAGGCCA
TGGCCCTTCATCCGTCTTCTGCTCCATCGGCTGACAGCATTGAAATGGCA
TTTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e02.b1 MSMg01no290_e02.b1 CHROMAT_FILE:
MSMg01no290_e02.b1 PHD_FILE: MSMg01no290_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:45 2005
         (313 letters)



>mm_chr4_139263943_139264655
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtcgactaggctggccttgaactcacaaagatctgcctgcttctgcct 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtcgaccaggctggccttgaactcacaaagatctgcctgcttctgcct 263

                                                                       
Query: 64  agggctctggatccactcattggtggaaagtgaggtatagcctgagccaggtgacatcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggctctggatccactcattggtggaaagtgaggtatagcctgagccaggtgacatcag 323

                                                                       
Query: 124 ctctcacttccctgcgtgtaaatgaggatgatagactgagagagcaacacatgccaaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctcacttccctgcgtgtaaatgaggatgatagactgagagagcaacacatgccaaagg 383

                                                                       
Query: 184 cctggggcacaaaccagccctaggtgcgaggtgggtgggtataggataagatagagctgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctggggcacaaaccagccctaggtgcgaggtgggtgggtataggataagatagagctgc 443

                                                                       
Query: 244 gatctgtgtggactgcaatggctactgtgactgagttactgctgccccctcaatactctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatctgtgtggactgcaatggctactgtgactgagttactgctgccccctcaatactctg 503

                     
Query: 304 ctcccagtcc 313
           ||||||||||
Sbjct: 504 ctcccagtcc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_e02.g1 MSMg01no290_e02.g1 CHROMAT_FILE:
MSMg01no290_e02.g1 PHD_FILE: MSMg01no290_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:45 2005
         (288 letters)



>mm_chr4_139422560_139423247
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagctacttcctgcttgttcttctcctttgttttctgctagttttcctaattaaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 484 aggagctacttcctgcttgttcttctcctttgttttctgctagttttgttaattaaaata 425

                                                                       
Query: 61  gttcttggaatagaacacatgtacagagaagtcacaagtcattcagggctgacatgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gttcttggaatagaacacatgtacagagaagtcacaagtcattcagggctgacatgatgg 365

                                                                       
Query: 121 atttccaccctgtgaagcagccacgcccactgaaagccagatacaacctgcagcctgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttccaccctgtgaagcagccacgcccactgaaagccagatacaacctgcagcctgcaa 305

                                                                       
Query: 181 gcccctgtcacactggaactggtcactgttgttctataactattgtcctgtgttagctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcccctgtcacactggaactggtcactgttgttctataactattgtcctgtgttagctgc 245

                                                       
Query: 241 ttttaatcattaatattgtttgtggcacagggtcccctatagcc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttttaatcattaatattgtttgtggcacagggtcccctatagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)