BAC Information

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BAC

Clone NameMSMg01-290G04
Chromosome4 (Build37)
Map Location 23,208,755 - 23,208,990
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl4, Pou3f2, LOC664911, 1700025O08Rik
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290G04.T7 (MSMg01no290_g04.b1)MSMg01-290G04.TJ (MSMg01no290_g04.g1)
ACCAG419676AG419677
length751754
length of high quality
(start - end)
319 (45 - 363)236 (129 - 364)
definitionCHROMAT_FILE: MSMg01no290_g04.b1 PHD_FILE: MSMg01no290_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:55 2005CHROMAT_FILE: MSMg01no290_g04.g1 PHD_FILE: MSMg01no290_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTTCTCTGAGCCCCAGTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTTAGCCCCTTATATATATTGGATATTAGTCTCCT
ATCTGATTTAGGATTGATAAAGATCCTTTCCCAATCAGGTGGTGGCCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGTAATTTTATG
AGTTCCCATTTGTCAATTCTCAATCTTACAACACAAGCCATTGCTGTTCT
ATTCAGGAATTTTCCCCCTGTGCCCATATCTTTGAGAGTTTTCCCCACTC
TCTCCTCTATTTGTTTCTGTGCCTCTGGCCTTATATGGAGTTCCTTGCCA
CAGTTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTTTGGTTTTTCACA
AGACAATCACTGAATTTCTGATAAGGACTCTTGGTGAACATAGTCTGTTT
CCAGAGGTCAGGGGTCAGGTAACTGCAGGTCTTGGAGATGGCATCAAAGG
TGGCCTTGGCAAAGTTGCCCAAGACTGCAGTACAGCCTCTCTGGCTAAAT
TGTAGTAGTCATCTGTATTGACCATCATCATTATCTTCTTGGGATCAGGA
GCAGAGACAATGCCAGTGCCTCTGGGGTCAGGGATGAGATGCACCAGCAC
AGAGCCACAGCAGTCTGTCACCTTGCATGGAACAGTGAGGGGCTTGCCAA
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCTTCACAGATCTGCAGTTCA
ACCTCCTGTTCATATCAGTTTTCACCTTCTACAAACCCTGGTACAGTTTT
ATTATTCTTTTGCTTGTCAATTTTGTATTGGACACTTTATAGAGCTAGAC
ATGACTCTGGTTATAGCAACAAAGAAGAAAACAAATAAAACAAAACCACC
TATCCTTCTGAGGCTTACGTTCATAGAATCGACAAGCATTTTATTTAAAG
GGTCTCAGAACTACATTTGATGAGCATCTAATGGAGACACAATTGAAAAA
GACATCTCTGTAATNATTTTTATCACACCACCCCCCATAATAGCCAGTTA
TGAAACAAGCCCTGGTGCCAATGCTACCAATAAAAGAAAATAAAGTGTGG
AACACACACACGCACACGCACACGCACACACACACACACACACACACACA
CACACACACATATGTATATTGAAATATTATTCAACTGAGAGGGGAAAAAT
ATAATTTGTGGGAGAACTAGTGCTACTAGTGATTATTATGTCAAGTGAAA
TAAACGAAACTCAGAAAGATAAATATTGTTACCTTGTATCTCATGGAGAA
TTTTTAATGTTTTTAAATCTTTTAAAATACAGGAATGTTAAACGGAAGAT
ATTTGGGAAGAGGAAATTAATAGAGGCTGAAGGTCAAGAAAGCATAAGAC
AGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_g04.g1 MSMg01no290_g04.g1 CHROMAT_FILE:
MSMg01no290_g04.g1 PHD_FILE: MSMg01no290_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:55 2005
         (236 letters)



>mm_chr4_23208555_23209191
          Length = 637

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacaaaccctggtacagttttattattcttttgcttgtcaattttgtattggacacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacaaaccctggtacagttttattattcttttgcttgtcaattttgtattggacacttt 260

                                                                       
Query: 61  atagagctagacatgactctggttatagcaacaaagaagaaaacaaataaaacaaaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagagctagacatgactctggttatagcaacaaagaagaaaacaaataaaacaaaacca 320

                                                                       
Query: 121 cctatccttctgaggcttacgttcatagaatcgacaagcattttatttaaagggtctcag 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatccttctgaggcttacgttcatagaatcgacaagcattttatttaaagggtctcag 380

                                                                   
Query: 181 aactacatttgatgagcatctaatggagacacaattgaaaaa-gacatctctgtaa 235
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aactacatttgatgagcatctaatggagacacaattgaaaaaagacatctctgtaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space:   142556
Effective search space used:   142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)