BAC Information

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BAC

Clone NameMSMg01-290H09
Chromosome4 (Build37)
Map Location 94,690,249 - 94,690,647
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1
Downstream geneLOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik, Hook1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290H09.T7 (MSMg01no290_h09.b1)MSMg01-290H09.TJ (MSMg01no290_h09.g1)
ACCAG419734AG419735
length730733
length of high quality
(start - end)
660 (71 - 730)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no290_h09.b1 PHD_FILE: MSMg01no290_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:01 2005CHROMAT_FILE: MSMg01no290_h09.g1 PHD_FILE: MSMg01no290_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTACATTGCCAAGTTTGGCCCCATTTTGTTCTCTGTCAACC
TCTCTTTGGCTTTCTACCACGAGACAATGCAAAAGAGAAGCCCATGCCAG
ATACTACCTCCTCTGCCTTGGACTTCTTAGTCTTTAGGATGGTGAACTAA
TGGATTTTTGCCTGTTATAAATTGCCTAGTCAATGGTACCCTGTTGTGAT
GGTACATAAAGAACCAAGACAGAAGTCTGTGAACAGCTCCTGACCTGGAA
TTTAGAAGACTCAGATTCTGATCAGCTTTGCCAATAAGTCACTTTGAGTC
ACTTTCAGCTGACAATTAACTTCTCTCTCACGTCCTCAGTGGGTCACTTC
AGTTCCTAAATGACACAGTTGAGTCCAATCTAAACTCCATGAAGGCACGG
GCTTGATTCACTGCCATCTGCCCAGGGCCTCGAGCCAAGCACACACACCA
GGAAGAACTCAACATACTTGTTTAACACATGAAATGGCTTCAAAGTGACT
AACAGCAAACAGAGGAGTTGATTCAATCAGTTCCAAAAATCTCAAGTTTT
TTCTTCCCTTTCATTAGCAAGATGAGTAAAATCCCAGCTCATCTGGCTCT
TAGCAACCGGTGCTCAAAAGTTGTTCTGGTTGGGTGACTGGCCAGCTGTG
CGTTCTTCTATGTGCTCTACTATTATCACG
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGATGTGGACATCAATCGAC
TGTCAGATGTGTAACTGACAAAGACTTTTCTCCCATTTCTTAAGCTGTGT
CTTCTTCATCCTTCTGATTGTTTCCTTCACTGCGCAGAAGCTCTTAAATT
CCATGCAATCTATCTTCCTTTCTTCCTTCCTTTTTTTCTTTCTTTCTTTT
TTTGTCAATTTTTAGGTTGGTTTTCTATGCTATTAGTGTCCTTTTAAGAA
ATCCCTTGCCTGTGTCTGTACCTTGAAGCATTTCCCGGTTGTTCTAGCAG
GTTGAGAATTCTGTTCTCACATGGCCCTCAATCCATTTTTAATCAATTTT
TGCACAGGGTGAGACATGGGAACCAAGCTAGCTTCACATTTCTATATCTG
GATGTCTACTCTTCTTAGCATCGTTTTCTGAAGAGGCTCTTTTCTCCAGT
GTGTGTTCTATAACTTTGTTAAAATTAGGTGGTTGTAGTTCTGGGGTGTA
TTTCTGAGTTCTCTGTCTTAGCTAATTAATCCACCTGACTGGTTTCATTG
CCAGTGACCTACTATTTCTGATACAATGGCTCTCTGGCTATTTGTGGTCT
TTATTTCATATAAACTTATAGATTTTTTTCTTTAGTTCTATGATCAATGT
TATTAGACTTTTAAAATAAGGATTGTGTTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_h09.b1 MSMg01no290_h09.b1 CHROMAT_FILE:
MSMg01no290_h09.b1 PHD_FILE: MSMg01no290_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:01 2005
         (660 letters)



>mm_chr4_94689587_94690647
          Length = 1061

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%), Gaps = 1/399 (0%)
 Strand = Plus / Minus

                                                                        
Query: 263  aataagtcactttgagtcactttcagctgacaattaacttctctctcacgtcctcagtgg 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 aataagtcactttgagtcactttcagctgacaattaacttctctctcacgtcctcagtgg 1002

                                                                        
Query: 323  gtcacttcagttcctaaatgacacagttgagtccaatctaaactccatgaaggcacgggc 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gtcacttcagttcctaaatgacacagttgagtccaatctaaactccatgaaggcacgggc 942

                                                                        
Query: 383  ttgattcactgccatctgcccagggcctcgagccaagcacacacaccaggaagaactcaa 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  ttgattcactgccatctgcccagggcctcgagccaagcacacacaccaggaagaactcaa 882

                                                                        
Query: 443  catacttgtttaacacatgaaatggcttcaaagtgactaacagcaaacagaggagttgat 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  catacttgtttaacacatgaaatggcttcaaagtgactaacagcaaacagaggagttgat 822

                                                                        
Query: 503  tcaatcagttccaaaaatctcaagttttttcttccctttcattagcaagatgagt-aaaa 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 821  tcaatcagttccaaaaatctcaagttttttcttccctttcattagcaagatgagtaaaaa 762

                                                                        
Query: 562  tcccagctcatctggctcttagcaaccggtgctcaaaagttgttctggttgggtgactgg 621
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 761  tcccagctcatctggctcttagcaaccggtgctcaaaagctgttctggttgggtgactgg 702

                                                   
Query: 622  ccagctgtgcgttcttctatgtgctctactattatcacg 660
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 701  ccagctgtgcgttcttctatgtgctctactattatcacg 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)