Query= MSMg01no290_l03.b1 MSMg01no290_l03.b1 CHROMAT_FILE:
MSMg01no290_l03.b1 PHD_FILE: MSMg01no290_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:19 2005
(667 letters)
>mm_chr4_69157141_69158210
Length = 1070
Score = 1234 bits (638), Expect = 0.0
Identities = 658/666 (98%), Gaps = 3/666 (0%)
Strand = Plus / Minus
Query: 5 gaattctgttctactatcttcgcaatgtatcaggagaacaccaaaaatagagcacagcta 64
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaattctgttctactatcatggcaatgtatcaggagaacaccaaaaatagagcacagcta 632
Query: 65 tgccattttcactggaagccaacctgaaagccattcgcattgcagtaaactctagctcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgccattttcactggaagccaacctgaaagccattcgcattgcagtaaactctagctcct 572
Query: 125 cctgcccagttgacactgataacttgttctgaatggaggatctacaaattccaggaacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cctgcccagttgacactgataacttgttctgaatggaggatctacaaattccaggaacaa 512
Query: 185 agagaacaatcaggcaataaatccccgaagaggagccatccaagtgcataaggaaaaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agagaacaatcaggcaataaatccccgaagaggagccatccaagtgcataaggaaaaaga 452
Query: 245 tgaagcagaaaactgatctgaacatttctttccagacgttgacactttctctctaccatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgaagcagaaaactgatctgaacatttctttccagacgttgacactttctctctaccatg 392
Query: 305 ctctgataactcctcaaaggccaggctttctgtgcatgtagaggagaaaatgaatggcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctctgataactcctcaaaggccaggctttctgtgcatgtagaggagaaaatgaatggcta 332
Query: 365 tgcctctct---tttttttttctgggattcctttatgaattttactgaaaaatttcaatg 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgcctctctctttttttttttctgggattcctttatgaattttactgaaaaatttcaatg 272
Query: 422 tgataagcatcatgttaaaagcaaatcaaagcaaaaattcccattatttttcaaaggcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgataagcatcatgttaaaagcaaatcaaagcaaaaattcccattatttttcaaaggcag 212
Query: 482 aggatgttggtattctgtctcaactctacccccacagttatttggcaacagccaggtatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aggatgttggtattctgtctcaactctacccccacagttatttggcaacagccaggtatg 152
Query: 542 ctcctctccacacttacctggacacagccaggtaggctagacgcactataaaaggggctg 601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 151 ctcctctccacacttacctggacacagccaggtaggccagacgcactataaaaggggctg 92
Query: 602 cttgctccctcctctcaaacttactcctgcttctttcccctggctcttgtctccttgttc 661
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 91 cttgctccctcctctcaaacttactcctgcttctttcccttgtctcttgtctccttgttc 32
Query: 662 cccctc 667
||||||
Sbjct: 31 cccctc 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_l03.g1 MSMg01no290_l03.g1 CHROMAT_FILE:
MSMg01no290_l03.g1 PHD_FILE: MSMg01no290_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:19 2005
(607 letters)
>mm_chr4_68992345_68993351
Length = 1007
Score = 901 bits (466), Expect = 0.0
Identities = 543/607 (89%), Gaps = 58/607 (9%)
Strand = Plus / Plus
Query: 1 cttttatataatagtctacagaatttcattcatataatagcctatgcctctgtttagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttttatataatagtctacagaatttcattcatataatagcctatgcctctgtttagagt 318
Query: 61 acattttctaatatatatatataatatataatatatatataatatatatatatattagaa 120
|||||||||||||||||||||||
Sbjct: 319 acattttctaatatatatatata------------------------------------- 341
Query: 121 aatgtactctaaatatatatatattcattctttacttgattgttacttgatgtgatttgt 180
|||||||||||||||||||| |||||||||||||||| |
Sbjct: 342 ---------------------tattcattctttacttgattattacttgatgtgatttct 380
Query: 181 ttgagaaaatatcttactttataactcttagactcgatataatcctgctttaccctccca 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagaaaatatcttactttgtaactcttagactcgatataatcctgctttaccctccca 440
Query: 241 agggctggaattacaggtatgtactaatactatgcattgattgttttttgcattttctcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggctggaattacaggtatgtactaatactatgcattgattgttttttgcattttctca 500
Query: 301 catcaatcttgctaacttttacctaccaaggctgctttacattactttaggatatgagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcaatcttgctaacttttacctaccaaggctgctttacattactttaggatatgagtt 560
Query: 361 tcaagtggtgatatctattaagttgtatgtagattatagaagcattgtataacaggcaaa 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagtggtgataactattaagttgtatgtagattatagaagcattgtataacaggcaaa 620
Query: 421 gggaaactgacaatttagtagaccatgaaaaaatagttatcaatgattaaatttatccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaaactgacaatttagtagaccatgaaaaaatagttatcaatgattaaatttatccac 680
Query: 481 aggaaaatttagtcacatttgcattttnaatagattatcaacagccacatcaaggagagc 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaaatttagtcacatttgcattttaaatagattatcaacagccacatcaaggagagc 740
Query: 541 tttaatgacaggaataactggaatcaagcgatttctatcaaaagctactccaggaatctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttaatgacaggaataactggaatcaagcgatttctatcaaaagctactccaggaatctg 800
Query: 601 agtaaga 607
|||||||
Sbjct: 801 agtaaga 807
Score = 62.6 bits (32), Expect = 9e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 102 atatatatatatattagaaaatgtactctaaa 133
||||||||||||||||||||||||||||||||
Sbjct: 342 atatatatatatattagaaaatgtactctaaa 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
