BAC Information

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BAC

Clone NameMSMg01-291C24
Chromosome4 (Build37)
Map Location 139,388,504 - 139,551,508
singlet/doubletdoublet
Overlap genePax7, Gm1667, Klhdc7a
Upstream genePla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2
Downstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C24.T7 (MSMg01no291_c24.b1)MSMg01-291C24.TJ (MSMg01no291_c24.g1)
ACCAG420257AG420258
length765782
length of high quality
(start - end)		385 (376 - 760)343 (67 - 409)
definitionCHROMAT_FILE: MSMg01no291_c24.b1 PHD_FILE: MSMg01no291_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005CHROMAT_FILE: MSMg01no291_c24.g1 PHD_FILE: MSMg01no291_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,551,180 - 139,551,508)(139,388,504 - 139,388,845)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
CCTACCTGATGCACTCAATTCCCGGAGCCTTCGGAGCTTCAATATTGTTG
CAGCTAATTTAATATCGTCAAAACACAGCAGTTATTAGCGACTCTTCAAG
CAGGTGGATGGCGCAGCTCCAACTCCAGCAAATGAGACTCACTTCTCTGG
GAGACTGAGCCTCTGTTCTCCCCCCCACTCCCACCCCACCCCCGCCCCAT
GTCCTTGGCTTTTGAGAGGATGGAACTGCAGCTGGGAATCCAGGCAGCCT
TGATACCCAAGCCTGAGTATCTACATTCTTGTCTGGCTGACGCTGGTACC
ACACACCTCTTTCTGGAAAGGGGAGCCAGGGAACCAGAAGTTGGTGGACT
ACACTTGGCCCCCCACCCCTAACCCTGTGATTTATTAATTAATTAACTAA
CTAATTAATTAATTTTAATCTGGGAGTGCACACATGTACCCCCAGAGCCT
AGAAGCATCAGAACACCTAGATTTGGGGTCATAGATGGTTGTGAGCTGCC
AGTTATGAATGCTGGGAACCAAGGTCAGGTCTTCTAGAAGAACAGCAAGT
ACTCTTAACCATGAGGCCATCTTTCCAGCCCTCAACTCTACAGTTTGCTA
TGGTGGTCTTGGCCAGGCTCTTCTCCCCTGTAAGACTCAGTTTCCCTAGT
TACCGGCTATAGTGAGTACCAGCTAAACTTTCAGATTCCCAGTGCTCAGA
GTCTGTCCTGACAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCGGGGAGTCGCATCCTGCGGCGAAAGGCCGGC
AGCCGGTGACCCACGGAGCGCGGGCCGAGGGTCAGCGGAGTCCACGCAGA
AACTGACAAGTGTCCGCTCTAGAAACTTCCCGTGTCCCACGCGGAGACTG
GGACCCAGCAGAGCCCAGGAAGCCCCGCTGCTCGCTCCCCTGGAGGGTGC
CATCTCCGAGGTCCTCCGGGGGACCCTGTAAAGGCCTCCTGCGCGCTCTC
TTACCTTCCAGGGGGAAGTCGGTGCGCGGGTAGTTCTGCCCCGGGCCGGG
TCTCATCATCCTGGGGACCGCGCCGGGCAGCGCCGCCATTCCTGCGCACG
CTGGAGACCACCCCCCACNCGGCTGGATAAACCTCTTGGCGTCTCTTCCT
TTCACCCCTGCTGCGATCCTCCTCTCCTCTTCTTCCCTCCCCCCCCCACT
AGCCTCTTCCCCCTCCCTTCTGCACCCCCCCTCACCCGGTTGCAGATGCG
CCCCTTCCAGAAATTGGGCGCGGGTCGTTTTTGAGGTTGTATTTCTTCTC
CTTTTTTTTTTTTTCCTTTTCTCTCCCATTTATTTTCCCTTCTTTCTATC
CCCTGTTACTATTCCTACTTTTTATTTCTCCTCTATTCGCCTTATTTCCC
CTTGTAATTTTCTTTTTTCTCCCCCTTATATCTATTTCTCTTTTCCTCCC
TCTCTTTCTTCCTCCCTCCCTCCCCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c24.b1 MSMg01no291_c24.b1 CHROMAT_FILE:
MSMg01no291_c24.b1 PHD_FILE: MSMg01no291_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:55 2005
         (385 letters)



>mm_chr4_139550724_139551508
          Length = 785

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Minus

                                                                       
Query: 57  ttattaattaattaactaactaattaattaattttaatctgggagtgcacacatgtaccc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttattaattaattaactaactaattaattaattttaatctgggagtgcacacatgtaccc 726

                                                                       
Query: 117 ccagagcctagaagcatcagaacacctagatttggggtcatagatggttgtgagctgcca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccagagcctagaagcatcagaacacctagatttggggtcatagatggttgtgagctgcca 666

                                                                       
Query: 177 gttatgaatgctgggaaccaaggtcaggtcttctagaagaacagcaagtactcttaacca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gttatgaatgctgggaaccaaggtcaggtcttctagaagaacagcaagtactcttaacca 606

                                                                       
Query: 237 tgaggccatctttccagccctcaactctacagtttgctatggtggtcttggccaggctct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgaggccatctttccagccctcaactctacagtttgctatggtggtcttggccaggctct 546

                                                                       
Query: 297 tctcccctgtaagactcagtttccctagttaccggctatagtgagtaccagctaaacttt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctcccctgtaagactcagtttccctagttaccggctatagtgagtaccagctaaacttt 486

                                        
Query: 357 cagattcccagtgctcagagtctgtcctg 385
           |||||||||||||||||||||||||||||
Sbjct: 485 cagattcccagtgctcagagtctgtcctg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no291_c24.g1 MSMg01no291_c24.g1 CHROMAT_FILE:
MSMg01no291_c24.g1 PHD_FILE: MSMg01no291_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:55 2005
         (343 letters)



>mm_chr4_139388304_139389046
          Length = 743

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccggggagtcgcatcctgcggcgaaaggccggcagccggtgacccacggagcgcgggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccggggagtcgcatcctgcggcgaaaggccggcagccggtgacccacggagcgcgggcc 260

                                                                       
Query: 61  gagggtcagcggagtccacgcagaaactgacaagtgtccgctctagaaacttcccgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggtcagcggagtccacgcagaaactgacaagtgtccgctctagaaacttcccgtgtc 320

                                                                       
Query: 121 ccacgcggagactgggacccagcagagcccaggaagccccgctgctcgctcccctggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacgcggagactgggacccagcagagcccaggaagccccgctgctcgctcccctggagg 380

                                                                       
Query: 181 gtgccatctccgaggtcctccgggggaccctgtaaaggcctcctgcgcgctctcttacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccatctccgaggtcctccgggggaccctgtaaaggcctcctgcgcgctctcttacct 440

                                                                       
Query: 241 tccagggggaagtcggtgcgcgggtagttctgccccgggccgggtctcatcatcctgggg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagggggaagccggtgcgcgggtagttctgccccgggccgggtctcatcatcctgggg 500

                                                     
Query: 301 accgcgccgggcagcgccgccattcctgcgcacgctggagac 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accgcgccgggcagcgccgccattcctgcgcacgctggagac 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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