BAC Information

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BAC

Clone NameMSMg01-291E06
Chromosome4 (Build37)
Map Location 66,511,451 - 66,511,953
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291E06.T7 (MSMg01no291_e06.b1)MSMg01-291E06.TJ (MSMg01no291_e06.g1)
ACCAG420313AG420314
length742741
length of high quality
(start - end)
364 (379 - 742)613 (73 - 685)
definitionCHROMAT_FILE: MSMg01no291_e06.b1 PHD_FILE: MSMg01no291_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:00 2005CHROMAT_FILE: MSMg01no291_e06.g1 PHD_FILE: MSMg01no291_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAGGTCTTTGGTTTCTTATATCAATTTTCTATAATTTTCAGAATAA
AACTTGTGTGCTGTTTGCCCATACAGCACACATGTACTCTCTGGCACTTG
GGAGATTGAGGATGAATTATATTAAATATGAGGTTAATATGAACTATATA
ATAATACTTTTTTTCAAAAATAAGAAAAGAATCAAAAACAACAAAGGACT
CCAAATTTGTATCATTTGTTAGAGATGCACCTATGTATATTTTTTATTAC
ACATGAAACTTTAAGTTTTGATGTGTATATATGTAATGATAGTATAAGAA
CATGTTTTTATATTCTGCCCCCCGCCGCTATTGTACATTTATTAAATACT
TCTATCTATACCCCCCTATAAAAATAAGGGCACACTTGTATTTCTCTTTC
CAATATGTATAATCTGTCTTTCTTTTTCTTGGTTTATGGTACTATCTAAA
ACTTATGACACTGTACTGAATAAGATTGATGAACATGGACATCTGTTTTT
GCTTCTGATTTCCCTGGAAAGGGAATTTTGTCTATCAATATTTAGAATCA
TTCCAGCTACCAGTATGTTTGGCTTTGTTTTACAGACAATCTTTCTTAGA
TTGGGAATACTCACTCTAATAGCTCAGATTATGAACCTGTAACAGTGTAA
CTCACATAATCAACTGAATAGGATTTAAGGTTTACCTTAATA
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATGCTTTGGGCATAAGGGTAATAGGA
AAGAGAAAGAGAATTCAGAGAGACAGAGAAAAATAAAACAAGAATGAAGT
TAGTACCCACAAAAACTTAAAGTATGGTCCACATATGTCACAAAAGATAA
AGGTATTCCCTACCTTGGCTGATAATTAGAATTCGATCCTTTTTTTTTTT
TTTTTTTTTATTTGGTTTTTTGAGACGGGGTTTTTCTGTGTAGCTCTGGC
TGTCCTGGAACTCACTTTTTAGACCAGGCTGGCCTTGAACTCAGGAATCT
GCCTGCCTTTGCCTCCCGAGTACTGGGATTAATTGTACCTATGTGGTGGC
AGGAGAAATCCACCTCCCACGAATTGTACTGAGAATCCTCTTATTGCTAC
AAGTGGACTATAATCTGCACATGTGTGTATGTGTGCACATGTGTTCATGC
CTACACACTATTGGAATGTAATCAGGGAAAGAAAGTATAAAGAGTAGAAA
ATGGTGGTGGTATGTGACCAGTGAACTTAACTGAACTTGTGCTTTTTGGA
CGAGGATGCTGCCAGAGCCGAGAGTTTGGTATAAACAGGAGCACAGATCA
TATGAAGAGGAAAACTAACTGAGGGCATATGCTCAGAAAAGAATATTGGA
AGGGAAGTTCCTGGGATGCTTAGACACCTGACTTAGGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_e06.g1 MSMg01no291_e06.g1 CHROMAT_FILE:
MSMg01no291_e06.g1 PHD_FILE: MSMg01no291_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:01 2005
         (613 letters)



>mm_chr4_66510941_66511953
          Length = 1013

 Score =  849 bits (439), Expect = 0.0
 Identities = 474/503 (94%), Gaps = 27/503 (5%)
 Strand = Plus / Minus

                                                                        
Query: 138  ctaccttggctgataattagaattcgatcc---------------------------ttt 170
            ||||||||||||||||||||||||||||||                           |||
Sbjct: 1013 ctaccttggctgataattagaattcgatcctttttttttttttttttttttttttttttt 954

                                                                        
Query: 171  tttttttttttttttttatttggttttttgagacggggtttttctgtgtagctctggctg 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  tttttttttttttttttatttggttttttgagacggggtttttctgtgtagctctggctg 894

                                                                        
Query: 231  tcctggaactcactttttagaccaggctggccttgaactcaggaatctgcctgcctttgc 290
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 893  tcctggaactcactttttagaccaggctggccttgaactcaggaatctgcctgcctctgc 834

                                                                        
Query: 291  ctcccgagtactgggattaattgtacctatgtggtggcaggagaaatccacctcccacga 350
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 833  ctcccgagtactgggattaattgtacctatgtggtggcaggagaaatccaactcccacga 774

                                                                        
Query: 351  attgtactgagaatcctcttattgctacaagtggactataatctgcacatgtgtgtatgt 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  attgtactgagaatcctcttattgctacaagtggactataatctgcacatgtgtgtatgt 714

                                                                        
Query: 411  gtgcacatgtgttcatgcctacacactattggaatgtaatcagggaaagaaagtataaag 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  gtgcacatgtgttcatgcctacacactattggaatgtaatcagggaaagaaagtataaag 654

                                                                        
Query: 471  agtagaaaatggtggtggtatgtgaccagtgaacttaactgaacttgtgctttttggacg 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  agtagaaaatggtggtggtatgtgaccagtgaacttaactgaacttgtgctttttggacg 594

                                                                        
Query: 531  aggatgctgccagagccgagagtttggtataaacaggagcacagatcatatgaagaggaa 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593  aggatgctgccagagccgagagtttggtataaacaggagcacagatcatatgaagaggaa 534

                                   
Query: 591  aactaactgagggcatatgctca 613
            |||||||||||||||||||||||
Sbjct: 533  aactaactgagggcatatgctca 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)