BAC Information

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BAC

Clone NameMSMg01-291J02
Chromosome4 (Build37)
Map Location 67,642,030 - 67,642,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291J02.T7 (MSMg01no291_j02.b1)MSMg01-291J02.TJ (MSMg01no291_j02.g1)
ACCAG420530AG420531
length740744
length of high quality
(start - end)
691 (45 - 735)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no291_j02.b1 PHD_FILE: MSMg01no291_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:23 2005CHROMAT_FILE: MSMg01no291_j02.g1 PHD_FILE: MSMg01no291_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGTTATTCACTCACTGATGAGTGGATATTAGCCCAGAAACTTA
GAAAACCCAAAACACAATTTTCAAACACACATGAAACTCAAAAAGAAGGA
AGACCAAAGTGTGGATACTTCGTCCCTCCTTAGAATAGGGAACAAAATAC
CCATGGAAGGAGTTACAGAGACAAAATTTGGAGCTGAGACAAAAGGATGG
ACCATCCAAAGATTGCACTGCCCAGGGATCTATCCCAAAATCAGCCACCA
AATGCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAAGGACCCTG
ATATAGCTCTCTCTTGTGAGGTTATGTCAGCGACTGGCAAACACAGAAGT
GGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCTCAATGGAGGA
GCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTTCAACCTTATAGGTGA
AACAACAATATGAACTAACCAGTAACCCCAGAGTTCGTATCTGTAGTGGC
ATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCC
TTGACCTTACAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGTCAA
GAAGTAGAAGTGGGTGAGTGGGGGAGCAGGGGAAGGGAGGGTATAGGGGA
CTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATACN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCACCATTTTCAATTGGATTT
CTTTTTGATGAATAAGGGTTTGTTGTTGTGGTTTGTTATATGTGGCAGAT
ACTATTTGGCTGTCAACATTGTGGCTACCAAATATTCTCTTATTTTGTGG
GCTACCTCTTCACTCAGTTCAGTTTTTTGTTTGTTTGTTTGGTTTTGTTG
TTGTTGTTGTTGTTTGGGGTGTGTGTGTGCATGTTTTACAGAGATTTTAG
TTGAATGACCTCACATGAATGTACTTATACAGCATAGATTTGACTCAGTG
ATTTACATTAAAAGATTTGATATTATCCCCCCCCCCCCCCAGTTTAAAAT
GAGTAGAGACAAAGGAAAAGACCACAAGACGGAAACAAAAATAAATGAAT
TGTATGCCTCTATTAAACTTTCAAAGAATAACCTTTGGAAAATAATTTAT
TTACTAATTTATTTTGCATAATTATTCTAAATTTATTGAGAAGTTGTTAC
ACAATTCAAAAGTATTTTTAATTTTTTTTTCTGGTTAGGGATTTTTCAAA
CTATTTGAAAAGCACAAAGGATATGGATAATAGGTGACAAAAAGTACATG
TGGCTATATGAAATAACTATATAAATTGCACTGCCGACAGGATAAATGCT
GGCCTGACTGTTTTGTGAGTGGAACGCTTTCCCAATTGTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_j02.g1 MSMg01no291_j02.g1 CHROMAT_FILE:
MSMg01no291_j02.g1 PHD_FILE: MSMg01no291_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:23 2005
         (292 letters)



>mm_chr4_67641830_67642521
          Length = 692

 Score =  480 bits (248), Expect = e-140
 Identities = 284/308 (92%), Gaps = 22/308 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcaccattttcaattggatttctttttgatgaataagggtttgttgttgtggtttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cctgcaccattttcaattggatttctttttgatgaataagggtttgtttttgtggtttgt 260

                                                                       
Query: 61  tatatgtggcagatactatttggctgtcaacattgtggctaccaaatattctcttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatgtggcagatactatttggctgtcaacattgtggctaccaaatattctcttatttt 320

                                                                       
Query: 121 gtgggctacctcttcactcagttcagttttttgtttgtttg-tt---tggttttgttgtt 176
           ||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||
Sbjct: 321 gtgggctacctcttcactcagttcagttttttgtttgtttggttggttggttttgttgtt 380

                                                                       
Query: 177 gttgttgttgtttggggtgtgtgtgtgcatgt----------------tttacagagatt 220
           |||||||||||||||||||||||||||  |||                ||||||||||||
Sbjct: 381 gttgttgttgtttggggtgtgtgtgtg--tgtgtgtgtgtgtgtgtgttttacagagatt 438

                                                                       
Query: 221 ttagttgaatgacctcacatgaatgtacttatacagcatagatttgactcagtgatttac 280
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 ttagttgaatgacctcacatgaatgtacttagacagcatagatttgactcagtgatttac 498

                   
Query: 281 attaaaag 288
           ||||||||
Sbjct: 499 attaaaag 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)