BAC Information

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BAC

Clone NameMSMg01-291L19
Chromosome4 (Build37)
Map Location 98,236,203 - 98,427,254
singlet/doubletdoublet
Overlap geneInadl, L1td1, Ankrd38
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1
Downstream geneLOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291L19.T7 (MSMg01no291_l19.b1)MSMg01-291L19.TJ (MSMg01no291_l19.g1)
ACCAG420651AG420652
length779741
length of high quality
(start - end)
189 (122 - 310)186 (138 - 323)
definitionCHROMAT_FILE: MSMg01no291_l19.b1 PHD_FILE: MSMg01no291_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:36 2005CHROMAT_FILE: MSMg01no291_l19.g1 PHD_FILE: MSMg01no291_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,236,203 - 98,236,391)(98,427,070 - 98,427,254)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGGAGTGGGCGGAATTCTTATTG
AGATCCCATAAAGACTGTTCCATTGGTAACTTGTTAGGGTCACATAGCCT
CTTTAGTTTATAACCCAGGAAATAGACTGGTCCTCAGGTACTCACTCTCC
AGATGATCTCTTCAGTACTCTGGCAAGGTTGTTCTATTTTCCTAAGCTTA
AATTCAGGGCATTGCTTTGAGTTTACTGAAGTTTAATATTCATTTTCCTC
ATTCATTCAGCTTGGTTTTTTGTTTGTTTGGTTGGTTGGTGTTTTTTGTT
TTTTGGTTTGGTTTTTTATTTCCNTNCNTTNNNCNTNCATATTTTCCACT
TTTTTTTTTTCCCCCCCCCCCTCATATTTATATATATTTTTTTATTTAAA
ATTTTTTCCCCCCCCCCCTAAAAAAAATAAAATTATATTATTCATAGTTA
ACCAATTATACCATTACTCTTATTTTCTTTTATACTTTTTCACATTTAAT
TTCATTCTTTCTCTTTCTTTTCCTCCTTCTAAGATTTTTCCTTATATTCT
CTTGCCCCTATTTTAATTCTCTTACATACTCCTTTGAACATTTCTTTCCC
CTTTTCCCCGTTATCTTATTCCCCTTCCCGCCCTTTTTATTTTTTTTATT
CCTCTGCTTCGCAATAATATACGCACTATTTTTTCTTTTTTTCCCCCCCT
TCACCACTTTTTATCCTTCTCCTATATTCCTACCATTATTCTCATACTAA
AAAAATATCTTCCTCATATAATATCTTTA
CGATGCAGTGGGAGGCCTGGNGGCCGCCTGGCCTTCGNCATGGGGNGAAC
TANAGAAGGATTCGCGAAAAACAGTGAGCAGAGATGCAATCTCAGGCCTG
ACTCTAGAATCATTATTTTTGACCACAAGAGAGAGAGGCTATCAACTGGC
ATCTTTGTAATTAACATCAAAGGCATCGGAAACTCTAGAGGGGGGGAAAG
AGAGGCCATTGCTATGCAAGGACAGTACCTCTTCCTGGATGCTGTTGGAG
CCATTTTAGTGACCAGCAGCAAGCCAAGTGGAACTCCTGCAGTCATAACT
CTTACACCCCTGCCCCCATTTCTTTTATTTTAAGAAAGCACAGGATTCCC
TGGTTCCACACTGTTTTTTTTATTCCCCCCACCCCGGCATGTAGTCTCCT
TTTCCAAACATGTAGTGAGACCCACCATATGAGAAAAAGAAGCCCCCTGT
GAGCTGCCTAAATCTGGAGTAATTCTGAACAGTACTAGCCCAGGGTCGCT
TAGAAGTGATTACTGCTCTTGCCTGGAAAAGGCCTGAGAAGAGATGCCTA
TGATACAGGCCAAGCAGGTCTGAGCCTTGAAGATCCCTAGCTGGCCAGAA
TAATAAACCAGGAAATGGGAGCCTCTTTTGGGCCCACATAGTGGTCACAA
ATAAGAGAGAATTATTGTTTTTTCTGGAGGTAGAGGAAAGCCATAAGAGA
GACAGCTTAGTTATGACTGTTAGAACTGACTTTAACTCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_l19.b1 MSMg01no291_l19.b1 CHROMAT_FILE:
MSMg01no291_l19.b1 PHD_FILE: MSMg01no291_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:36 2005
         (189 letters)



>mm_chr4_98236003_98236591
          Length = 589

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagactggtcctcaggtactcactctccagatgatctcttcagtactctggcaaggttg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 atagactggtcctcaggtactcactctccagatgacctcttcagtactctggcaaggttg 260

                                                                       
Query: 61  ttctattttcctaagcttaaattcagggcattgctttgagtttactgaagtttaatattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctattttcctaagcttaaattcagggcattgctttgagtttactgaagtttaatattc 320

                                                                       
Query: 121 attttcctcattcattcagcttggttttttgtttgtttggttggttggtgttttttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcctcattcattcagcttggttttttgtttgtttggttggttggtgttttttgttt 380

                    
Query: 181 tttggtttg 189
           |||| ||||
Sbjct: 381 tttgttttg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no291_l19.g1 MSMg01no291_l19.g1 CHROMAT_FILE:
MSMg01no291_l19.g1 PHD_FILE: MSMg01no291_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:36 2005
         (186 letters)



>mm_chr4_98426870_98427455
          Length = 586

 Score =  327 bits (169), Expect = 3e-94
 Identities = 181/185 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctatcaactggcatctttgtaattaacatcaaaggcatcggaaactctagaggggggga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctatcaactggcatctctgtaattaacatcaaaggcatcggaaactctagaggggggga 326

                                                                       
Query: 61  aagagaggccattgctatgcaaggacagtacctcttcctggatgctgttggagccatttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 325 aagagaggccattgctatgcaaggacagtacctcttcctggatgctgttggagccatcag 266

                                                                       
Query: 121 agtgaccagcagcaagccaagtggaactcctgcagtcataactcttacacccctgccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgaccagcagcaagccaagtggaactcctgcagtcataactcttacacccctgccccc 206

                
Query: 181 atttc 185
           |||||
Sbjct: 205 atttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)