TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGAAATTACCCCAAAAGGATGGGGGATAAGTATCCCAAAAGAAAT
GTGTTTCTTGGGCTGGTGAGACGGCTCAGTGGGTAAGAGCACCTGACTGC
TCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA
ACCATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGC
TACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAAAAAAAAA
AAAGAAATGTGTTTCTTAGAAGAATGTTTAATATTATTGAAATACGAATG
GTTAAGTTTTATCTTTTACTTGCCCCCGCCACCTACCTAGTGTAGTTCAT
TTGTGATACAGGGGGCCGCGCGAGAAAAAAAAAAAAAGTTGTGGTGGGGG
GGGGGCCTCTCTCTATTTACTCTATATTAACCAACTTTTTACACCTTTTA
TTTCCTTTCCATTCCATATCATTCATCTTTTATCGACGTCCTTTACCCTA
CCATTTTTTCTTCCCCCTCTTAGATGATTTGCCTCGCGGCCTTTTTCTCT
TCATTTTATTGCTGTCCGGCATTTTCCCCTCCCCCCTACTTTCTCGTATC
CCTATTTCCCTCCCCCTATTTTATTCCTCTTTTGTCTCTCCCCCCTTTGC
CTTTCTCTCCCCGATACCTTCCACTATTTTGTTATCACTATCCATTTCAT
TCTTTTACCTATCGTTTATT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGAAACCTTGTGGGACCATTTAAA
ATTACAAGATTTATGAAGTGTGAACATGGGTTTCAAGCCCATTGTATTTA
GGTCTTAGAGGAACAAAAAGATGATCCTGGCATTCAGGTTTTGGCACTTC
TGTCCCTCCCATACCCCCTCCCCCACCTTATGTCCCTATTCCCTGGTGCT
TGACCAACACAGAGAAGAACACACTAAATCAAATTATTTTAGATGATCAT
TGTCCAGATCCAAATGCCCAAGGAAGAATGGGAAGAAAGACAAAATTCTG
CCTTCGCTTTTAATCAAATTGGCTATCAACTATAGTGACAAAAATACATT
CATCCTCAATATAACCACATAAGGTACCTGCTTGCACCCTTGTTTCTAAG
GGACACATTTTTGCTCAACTCAGTGTACCGGTGAGCCTACACCACAGTCT
GATCCCAGGGAGTCAGCTTGCCTTTATACACAAGAAAAAACTTAGATTCG
TTGTGGTTATTCAGTGGATACCATCTGCATTAAGATTTCTACAAATAAAA
CTGCCTTAAATAATCTCTTCTAATTGTTAGGGTAGAGAAATTGGTGCTCC
AGGGTCTTAGTTTTTACACAAGACATAAAATTGATGCTTTTCATAAAACT
AGAGTCACTGCTTAGAGTANGTAGTTGCATAAGTCCATGCCATTTG

Query= MSMg01no292_a10.g1 MSMg01no292_a10.g1 CHROMAT_FILE:
MSMg01no292_a10.g1 PHD_FILE: MSMg01no292_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:58 2005
         (643 letters)



>mm_chr4_108547884_108548927
          Length = 1044

 Score = 1214 bits (628), Expect = 0.0
 Identities = 640/644 (99%), Gaps = 1/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaaccttgtgggaccatttaaaattacaagatttatgaagtgtgaacatgggtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 acagaaaccttgtgggaccatttaaaattacaagatttatgaagtgtgaacatgggtttc 785

                                                                       
Query: 61  aagcccattgtatttaggtcttagaggaacaaaaagatgatcctggcattcaggttttgg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 784 aagcccattgtatttaggtcttagaggaacgaaaagatgatcctggcattcaggttttgg 725

                                                                       
Query: 121 cacttctgtccctcccataccccctcccccaccttatgtccctattccctggtgcttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cacttctgtccctcccataccccctcccccaccttatgtccctattccctggtgcttgac 665

                                                                       
Query: 181 caacacagagaagaacacactaaatcaaattattttagatgatcattgtccagatccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 caacacagagaagaacacactaaatcaaattattttagatgatcattgtccagatccaaa 605

                                                                       
Query: 241 tgcccaaggaagaatgggaagaaagacaaaattctgccttcgcttttaatcaaattggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgcccaaggaagaatgggaagaaagacaaaattctgccttcgcttttaatcaaattggct 545

                                                                       
Query: 301 atcaactatagtgacaaaaatacattcatcctcaatataaccacataaggtacctgcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atcaactatagtgacaaaaatacattcatcctcaatataaccacataaggtacctgcttg 485

                                                                       
Query: 361 cacccttgtttctaagggacacatttttgctcaactcagtgtaccggtgagcctacacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cacccttgtttctaagggacacatttttgctcaactcagtgtaccggtgagcctacacca 425

                                                                       
Query: 421 cagtctgatcccagggagtcagcttgcctttatacacaag-aaaaaacttagattcgttg 479
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 424 cagtctgatcccagggagtcagcttgcctttatacacaagaaaaaaacttagattcattg 365

                                                                       
Query: 480 tggttattcagtggataccatctgcattaagatttctacaaataaaactgccttaaataa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggttattcagtggataccatctgcattaagatttctacaaataaaactgccttaaataa 305

                                                                       
Query: 540 tctcttctaattgttagggtagagaaattggtgctccagggtcttagtttttacacaaga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctcttctaattgttagggtagagaaattggtgctccagggtcttagtttttacacaaga 245

                                                       
Query: 600 cataaaattgatgcttttcataaaactagagtcactgcttagag 643
           ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 cataaaattgatgtttttcataaaactagagtcactgcttagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space:   654522
Effective search space used:   654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)