BAC Information

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BAC

Clone NameMSMg01-292C09
Chromosome4 (Build37)
Map Location 118,895,840 - 118,896,146
singlet/doubletsinglet
Overlap genenone
Upstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik
Downstream geneAU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292C09.T7 (MSMg01no292_c09.b1)MSMg01-292C09.TJ (MSMg01no292_c09.g1)
ACCAG420948AG420949
length770763
length of high quality
(start - end)		315 (45 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no292_c09.b1 PHD_FILE: MSMg01no292_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:08 2005CHROMAT_FILE: MSMg01no292_c09.g1 PHD_FILE: MSMg01no292_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGCCCAGGCTGGCCATGAGCTCATAGAGATCCACCTGCC
TCTGTCTCCTGAGTGCTAGGATTGATGGTGTAAGTCACCGCAGCCTGGCT
GCAGGGCCTTATTTCAAAGAAGCAAAGTCTGCTGGGGGAAGAAGCTAGCC
ATAGCATGGTATAAGGACTTCGTGGAGGTATGTGTAGGCACTGAGAATAT
GGGAAGGCTTGGAAGGTTCTATTCTGTGTATAGGAAGCCTGTCTTTGGGG
ACCAGGGAGGGTTCTTTTTGGTTGAAATGTATTGGATATGCCTTTTAACC
TCATCAAACTTTAGGAATCCCGCCCTTTACCAGGAGTTGTGGTAAGACTC
TTCTGGGAAGAACCCCCCCCCCCCCAAAANAAAAGAATGGAAGGATGTAA
TCACGCTGCTTGAAACAATAACCAATTACTAGAGTCGGATACGTTTCTCG
ATTTGCGCTACAAACCTTGCATTGTAAATTGTATTCCTTTTTGAACTGCA
TTGTTCTCTCCATGCATATTCCTAATTCACCTGAGTAATCTTTTAGCTCA
TATTTCTTCCTTTATTTTTACCTTTACTCTAATTGTTTATACATATTCTC
TCCTCTTATTGTCACCCCATCTATCTCCTACTTTTTTTTTACTCTTTTAC
CCCGTCTTATTCTCTCTTCTCCTTCTAGATTTTACTTTTATCTCCCGTTT
CTCCATTCCTTATCGCGCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCAGGGCTACACAGAG
AAAGCCTGTCTCGAAAAGACCAAAAAAAAAAAAAAAGGGGGGGGGGAGGC
CTGGAGAGATGGATCAGTGGTTAAGAGCACTGGCTGCTCGTCCAAAGGTC
CTGAGTTCAATTCCCAGCAGCCACATGGTGGCTCACAACCATCTGTAATG
GAATCTAATGCCCTCTTCTGGTGTGTCTGGAGACAGCTACAATGTACTCA
TATAAATAATAAATAAATAAAACTTTCCCCAAAAAACAAAAACAAATCAG
CCAGGCGTGGTGGTTTTTTTCTTTACTCCCCGCCCTCGGGAGGTAGAGGT
AGGTGGATTTCTGANCCCCCCCTCTTTAACAGAAAATAAAGTGAGTTCCG
CGAGAGGCAGGGCTACACAGAGAAAGCCTGTCTCCCTATCTTATCTTTTT
TCTTTTGTTCCCTTCTATCTTTAATCCCAAACACCATAATTAAAACTTTA
TGGGTTGGATCAATGGCTCAGTTGTTTAATAACTCTGACTGCTCCTTTTT
AGCTCCTTGTTTTTATTTCCCGCCATTCCCTCGTTGGATTCTAACTCATT
TTATTGGATTTTCTATGCCTCTCCCCTGTTCAGCCTCACCCTATCACTCT
TTTTATTTTCTTTCATCAACTTATCCCTCGTTTTTTTTTCCCTCAATTTA
TATCTTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_c09.b1 MSMg01no292_c09.b1 CHROMAT_FILE:
MSMg01no292_c09.b1 PHD_FILE: MSMg01no292_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:08 2005
         (315 letters)



>mm_chr4_118895534_118896246
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagcccaggctggccatgagctcatagagatccacctgcctctgtct 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaattcactctgtagaccaggctggccatgagctcatagagatccacctgcctctgtct 554

                                                                       
Query: 64  cctgagtgctaggattgatggtgtaagtcaccgcagcctggctgcagggccttatttcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctgagtgctaggattgatggtgtaagtcaccgcagcctggctgcagggccttatttcaa 494

                                                                       
Query: 124 agaagcaaagtctgctgggggaagaagctagccatagcatggtataaggacttcgtggag 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 493 agaagcaaagtctgctggggg-agaagctagccatagcatggtataagggcttcgtggag 435

                                                                       
Query: 184 gtatgtgtaggcactgagaatatgggaaggcttggaaggttctattctgtgtataggaag 243
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gt-cgtgtaggcactgagaatatgggaaggcttggaaggttctattctgtgtataggaag 376

                                                                       
Query: 244 cctgtctttggggaccagggagggttctttttggttgaaatgtattggatatgcctttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cctgtctttggggaccagggagggttctttttggttgaaatgtattggatatgcctttta 316

                    
Query: 304 acctcatca 312
           |||||||||
Sbjct: 315 acctcatca 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 713
Length adjustment: 9
Effective length of query: 306
Effective length of database: 704
Effective search space:   215424
Effective search space used:   215424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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