BAC Information

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BAC

Clone NameMSMg01-292E20
Chromosome4 (Build37)
Map Location 96,669,672 - 96,669,957
singlet/doubletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E20.T7 (MSMg01no292_e20.b1)MSMg01-292E20.TJ (MSMg01no292_e20.g1)
ACCAG421058AG421059
length774781
length of high quality
(start - end)
320 (45 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no292_e20.b1 PHD_FILE: MSMg01no292_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:19 2005CHROMAT_FILE: MSMg01no292_e20.g1 PHD_FILE: MSMg01no292_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCTTACACCAATCAAAATGGTTAAGACCAAAACCTCAGGTGACA
ACACATGTTGGAGAATGTGTGGAGAAAGAGGAATAACTCCTCCATTGCTG
GAGGGACTGCAAACTGGTACAACCACTTTGGAAATGAAACTGGAGTTTCC
TCAGAAAATTGGGAATAGATCTACCTGAAGACCCAGCTATACCACTCTTG
GGCATATAGCCAAAAGATGCCCCACCATGGTAAACCACAAGATTACATGA
TCCACTATGTGCATAGCAGCTTTATTTTTGGTAACCAGAAGCTGGAAACA
ACCTAGATGTTCCTTTTTGTTAAGAACACACACCGAAAATGTGGTTCATT
TACACAATGAAATACTACCCACCTCTTAATAATGAGGACATCCTGAGTTT
TGCAGGCAAATGGATGGGACTAGAAAATATCATCTTGAGTGAGGTATCTA
AAACCCAAAAGGACATTCATGGTATGTACTCACTAAGAGTGTATATTAGC
CAAAAGTGTACAGAATACCTAGGATACAATCCACAGAACTCAAGAAGGTG
AAAAGCCAATTCCATTTGGGAGAAAGAACATATTATAGGGCGGGACGGAA
CTGATAGTTATATTAGCAACCTACTTTTTCCTCTCTCTTTTTACCCCCTC
CATTCTCCCTTCTCCTCCACCTCTTTTATCTTCTATTATTTCCCTTACTC
CTCTCTCTTTCTCTATTCTTTTTT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGACATGACATAAAGGAAAAAGA
TAATTATCCTTTGCTGAGGTTATACTAGCACTTCACATATGCAGTGGAGA
AACCAGGAATAAAGTTAGTGTGGTAAATGTGTGAACAGTTTTCTGATCAC
TCATGGCACCATGGAAGTGTAGTGTGTACATGTACATAAGGTTTGCACAC
TTACACACTTTGCTTGCCCCCTTCCTTTATTTGCTCTATCTCTTAGGAAG
GGGATGAAATAAAGGAAGCAAAAGAAAGCACTGTACTCACTTACACAGCT
TCTAATTACCCCTTCATGTTGTTTCTGACCCCCCTCCTCTCAGTGAATTA
CTCACTGGCCTGTGTTGCCCCCCCCCCAACAAAACATCTCTTGCAGTGAT
CATGGGTGACTCTAGGTTCACATTTCTGATATTCCACTCCTACTCCAACT
GTCTGTTCAGCATATTTATTTTGCATCCTTATCAATACACCTCAGTATCC
TGCACTCATTGTCTTCATGCCTGTGTGGAGTTTTCTTACTCGCCTATGTT
TGTTTTTTTTGTCCCCCCCTTATACTCTACTGACTTTTTTGATATATTAA
TCCCAATCTTTGTTCCCCTTTCCTCTCTCTTCTAAACGCTATTATATTTT
TATCTCCTTTTTTTCTCCTCTTCCCTCTCTATCACTTCTCCTCTGTTCTT
TTTACCTTCTTCGAAACCCCCTCTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e20.g1 MSMg01no292_e20.g1 CHROMAT_FILE:
MSMg01no292_e20.g1 PHD_FILE: MSMg01no292_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:20 2005
         (292 letters)



>mm_chr4_96669468_96670159
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   catgacataaaggaaaaagataattatcctttgctgaggttatactagcacttcacatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 catgacataaaggaaaaagataattatcctttgctgaggttatactagcacttcacatat 264

                                                                       
Query: 65  gcagtggagaaaccaggaataaagttagtgtggtaaatgtgtgaacagttttctgatcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagtggagaaaccaggaataaagttagtgtggtaaatgtgtgaacagttttctgatcac 324

                                                                       
Query: 125 tcatggcaccatggaagtgtagtgtgtacatgtacataaggtttgcacacttacacactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatggcaccatggaagtgtagtgtgtacatgtacataaggtttgcacacttacacactt 384

                                                                       
Query: 185 tgcttgcccccttcctttatttgctctatctcttaggaaggggatgaaataaaggaagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttgcccccttcctttatttgctctatctcttaggaaggggatgaaataaaggaagca 444

                                                         
Query: 245 aaagaaagcactgtactcacttacacagcttctaattaccccttca 290
           |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 aaagaaagcactgtacccacttacacagcttctaattaccccttca 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)